CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Minc14167
(
Meloidogyne incognita
)
TBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00352 (TBP)
IPR000814
Minc14167
T343294_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tbp
M00216_2.00
Mus musculus
NWWWWAW
WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.731
0.731
TBP
M08231_2.00
Homo sapiens
YATTTGCATD
HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.731
0.731
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS
SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.731
0.731
Tbp
M09433_2.00
Mus musculus
VTATAAAARS
SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.731
0.731
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.731
0.731
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD
HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.731
0.731
TBP
M11390_2.00
Homo sapiens
KATAAATW
WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.731
0.731
TBP
M11391_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.731
0.731
TBP
M11392_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.731
0.731
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.731
0.731
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc14167
TBP
94
167
KPVLQNIVSTVNLDVRLDLNQIAKTALNSEYNPKRFSAVIMRIRDPRKIVCTGAKSEEASRLAARRFARIIQRL
Minc14167
TBP
175
235
EFKVQNLVASCDCKFRLQLEGFAITHYQFSTYEPELFPGLIYRMVKPRVVLLIFLSGKVVX
Links
Other
TBP
family TFs
Other
Meloidogyne incognita
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MhA1_Contig350.frz3.gene2
Meloidogyne hapla
MhA1_Contig350.frz3.gene2
N
0.804
maker-nMf.1.1.scaf06410-snap-gene-0.8
Meloidogyne floridensis
maker-nMf.1.1.scaf06410-snap-gene-0.8
I
0.802
Minc02372
Meloidogyne incognita
Minc02372
I
0.802
L596_g25394
Steinernema carpocapsae
L596_g25394
I
0.784
TBPL2
Erinaceus europaeus
ENSEEUG00000008616
I
0.746
ACEP14716
Atta cephalotes
ACEP14716
I
0.739
Cflo_04179--XP_623088.1_APIME
Camponotus floridanus
Cflo_04179--XP_623088.1_APIME
I
0.739
TriadG50358
Trichoplax adhaerens
TriadG50358
I
0.739
WALSEDRAFT_33220
Wallemia sebi
WALSEDRAFT_33220
I
0.731
TBPL2
Meleagris gallopavo
ENSMGAG00000013657
I
0.731
ENSECAG00000008702
Equus caballus
ENSECAG00000008702
I
0.731
TBPL2
Gallus gallus
ENSGALG00000012145
I
0.731
TBPL2
Gorilla gorilla
ENSGGOG00000001055
I
0.731
J056_000874
Wallemia ichthyophaga
J056_000874
I
0.731
ANCCAN_21534
Ancylostoma caninum
ANCCAN_21534
I
0.720
POPTR_0019s04890
Populus trichocarpa
POPTR_0019s04890
I
0.709
DACRYDRAFT_75233
Dacryopinax sp
DACRYDRAFT_75233
I
0.709
RO3G_16620
Rhizopus oryzae
RO3G_16620
I
0.709
OFLC_0000347601
Onchocerca flexuosa
OFLC_0000347601
I
0.707
SVUK_0000188301
Strongylus vulgaris
SVUK_0000188301
I
0.707
K437DRAFT_258899
Tilletiaria anomala
K437DRAFT_258899
I
0.701
PV04_08198
Capronia semiimmersa
PV04_08198
I
0.701