Minc14167 (Meloidogyne incognita)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Minc14167 T343294_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbp
M00216_2.00
Mus musculus
NWWWWAW

WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.731 0.731
TBP
M08231_2.00
Homo sapiens
YATTTGCATD

HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.731 0.731
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS

SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.731 0.731
Tbp
M09433_2.00
Mus musculus
VTATAAAARS

SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.731 0.731
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.731 0.731
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD

HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.731 0.731
TBP
M11390_2.00
Homo sapiens
KATAAATW

WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.731 0.731
TBP
M11391_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.731 0.731
TBP
M11392_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.731 0.731
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Minc14167 TBP 94 167
Minc14167 TBP 175 235

Links

Other TBP family TFs
Other Meloidogyne incognita TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MhA1_Contig350.frz3.gene2 Meloidogyne hapla MhA1_Contig350.frz3.gene2 N 0.804
maker-nMf.1.1.scaf06410-snap-gene-0.8 Meloidogyne floridensis maker-nMf.1.1.scaf06410-snap-gene-0.8 I 0.802
Minc02372 Meloidogyne incognita Minc02372 I 0.802
L596_g25394 Steinernema carpocapsae L596_g25394 I 0.784
TBPL2 Erinaceus europaeus ENSEEUG00000008616 I 0.746
ACEP14716 Atta cephalotes ACEP14716 I 0.739
Cflo_04179--XP_623088.1_APIME Camponotus floridanus Cflo_04179--XP_623088.1_APIME I 0.739
TriadG50358 Trichoplax adhaerens TriadG50358 I 0.739
WALSEDRAFT_33220 Wallemia sebi WALSEDRAFT_33220 I 0.731
TBPL2 Meleagris gallopavo ENSMGAG00000013657 I 0.731
ENSECAG00000008702 Equus caballus ENSECAG00000008702 I 0.731
TBPL2 Gallus gallus ENSGALG00000012145 I 0.731
TBPL2 Gorilla gorilla ENSGGOG00000001055 I 0.731
J056_000874 Wallemia ichthyophaga J056_000874 I 0.731
ANCCAN_21534 Ancylostoma caninum ANCCAN_21534 I 0.720
POPTR_0019s04890 Populus trichocarpa POPTR_0019s04890 I 0.709
DACRYDRAFT_75233 Dacryopinax sp DACRYDRAFT_75233 I 0.709
RO3G_16620 Rhizopus oryzae RO3G_16620 I 0.709
OFLC_0000347601 Onchocerca flexuosa OFLC_0000347601 I 0.707
SVUK_0000188301 Strongylus vulgaris SVUK_0000188301 I 0.707
K437DRAFT_258899 Tilletiaria anomala K437DRAFT_258899 I 0.701
PV04_08198 Capronia semiimmersa PV04_08198 I 0.701