maker-nMf.1.1.scaf06410-snap-gene-0.8 (Meloidogyne floridensis)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 maker-nMf.1.1.scaf06410-snap-gene-0.8 T343542_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbp
M00216_2.00
Mus musculus
NWWWWAW

WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.707 0.707
TBP
M08231_2.00
Homo sapiens
YATTTGCATD

HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.707 0.707
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS

SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.707 0.707
Tbp
M09433_2.00
Mus musculus
VTATAAAARS

SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.707 0.707
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.707 0.707
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD

HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.707 0.707
TBP
M11390_2.00
Homo sapiens
KATAAATW

WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.707 0.707
TBP
M11391_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.707 0.707
TBP
M11392_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.707 0.707
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
maker-nMf.1.1.scaf06410-snap-gene-0.8-mRNA-1 TBP 103 185
maker-nMf.1.1.scaf06410-snap-gene-0.8-mRNA-1 TBP 193 276

Links

Other TBP family TFs
Other Meloidogyne floridensis TFs

221 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29872.m000537 Ricinus communis 29872.m000537 N 0.000
Bo4g143710 Brassica oleracea Bo4g143710 N 0.000
Bostr.17016s0016 Boechera stricta Bostr.17016s0016 N 0.000
Bostr.25375s0003 Boechera stricta Bostr.25375s0003 N 0.000
Bostr.7200s0031 Boechera stricta Bostr.7200s0031 N 0.000
Cagra.6263s0002 Capsella grandiflora Cagra.6263s0002 N 0.000
cassava29451.valid.m1 Manihot esculenta cassava29451.valid.m1 N 0.000
chr3.CM0460.360.nd Lotus japonicus chr3.CM0460.360.nd N 0.000
Ciclev10011732m.g Citrus clementina Ciclev10011732m.g N 0.000
Cla005525 Citrullus lanatus Cla005525 N 0.000
Cucsa.180010 Cucumis sativus Cucsa.180010 N 0.000
Eucgr.A00903 Eucalyptus grandis Eucgr.A00903 N 0.000
fgenesh2_kg.7__3225__AT5G41920.1 Arabidopsis lyrata fgenesh2_kg.7__3225__AT5G41920.1 N 0.000
gene24339-v1.0-hybrid Fragaria vesca gene24339-v1.0-hybrid N 0.000
GLYMA11G10220 Glycine max GLYMA11G10220 N 0.000
Gorai.004G063200 Gossypium raimondii Gorai.004G063200 N 0.000
LPERR11G01220 Leersia perrieri LPERR11G01220 N 0.000
Pm014866 Prunus mume Pm014866 N 0.000
POPTR_0006s02220 Populus trichocarpa POPTR_0006s02220 N 0.000
POPTR_0016s02030 Populus trichocarpa POPTR_0016s02030 N 0.000
PRUPE_ppa005742mg Prunus persica PRUPE_ppa005742mg N 0.000
SapurV1A.0295s0450 Salix purpurea SapurV1A.0295s0450 N 0.000
SCL23 Arabidopsis thaliana AT5G41920 N 0.000
TCM_002021 Theobroma cacao TCM_002021 N 0.000
Thhalv10027784m.g Eutrema salsugineum Thhalv10027784m.g N 0.000
VIT_03s0017g01660 Vitis vinifera VIT_03s0017g01660 N 0.000