SVUK_0000188301 (Strongylus vulgaris)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 SVUK_0000188301 T343620_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbp
M00216_2.00
Mus musculus
NWWWWAW

WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.837 0.837
TBP
M08231_2.00
Homo sapiens
YATTTGCATD

HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.837 0.837
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS

SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.837 0.837
Tbp
M09433_2.00
Mus musculus
VTATAAAARS

SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.837 0.837
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.837 0.837
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD

HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.837 0.837
TBP
M11390_2.00
Homo sapiens
KATAAATW

WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.837 0.837
TBP
M11391_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.837 0.837
TBP
M11392_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.837 0.837
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.837 0.837
SPT15
M01567_2.00
Saccharomyces cerevisiae
NNDWDAW

WTHWHNN
PBM
Zhu et al.(2009)
Spt15
0.769 0.769
SPT15
M08609_2.00
Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB

VNHNNGNWATATATAWDVVNN
Misc
DeBoer et al.(2011)
YER148W_798
0.769 0.769
SPT15
M11393_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$TBP_Q6
0.769 0.769
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVUK_0000188301-mRNA-1 TBP 199 281
SVUK_0000188301-mRNA-1 TBP 289 352

Links

Other TBP family TFs
Other Strongylus vulgaris TFs

678 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CpipJ_CPIJ004542 Culex pipiens CpipJ_CPIJ004542 N 0.000
ASIS011446 Anopheles sinensis ASIS011446 N 0.000
AQUA003889 Anopheles quadriannulatus AQUA003889 N 0.000
AMIN010042 Anopheles minimus AMIN010042 N 0.000
AMEM010038 Anopheles merus AMEM010038 N 0.000
AMAM003160 Anopheles maculatus AMAM003160 N 0.000
AFUN001840 Anopheles funestus AFUN001840 N 0.000
AEPI006876 Anopheles epiroticus AEPI006876 N 0.000
ADIR003587 Anopheles dirus ADIR003587 N 0.000
ACUA002647 Anopheles culicifacies ACUA002647 N 0.000
ACOM031669 Anopheles coluzzii ACOM031669 N 0.000
AATE012769 Anopheles atroparvus AATE012769 N 0.000
AARA009134 Anopheles arabiensis AARA009134 N 0.000
AALB005283 Anopheles albimanus AALB005283 N 0.000
CPIJ004542 Culex quinquefasciatus CPIJ004542 N 0.000
AGAP006800 Anopheles gambiae AGAP006800 N 0.000
ADAC004683 Anopheles darlingi ADAC004683 N 0.000
AAEL009220 Aedes aegypti AAEL009220 N 0.000
ASTEI04678 Anopheles stephensi ASTEI04678 N 0.000