CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCP11
(
Arabidopsis thaliana
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
AT2G37000
T343684_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCP11
M11395_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_01
(Direct)
(Direct)
TCP11
M11396_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_02
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.905
0.408
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.897
0.430
PCF2
M11399_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.896
0.331
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC
GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.895
0.401
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.893
0.387
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.893
0.380
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.893
0.380
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.893
0.380
TCP15
M11394_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.893
0.380
TCP9
M01086_2.00
Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN
PBM
Sullivan et al.(2014)
pTH9796
0.889
0.366
TCP9
M07281_2.00
Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a
0.889
0.366
TCP9
M07282_2.00
Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH
Dap-seq
OMalley et al.(2016)
At2g45680_col_b
0.889
0.366
VIT_15s0048g01150
M02515_2.00
Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN
PBM
Weirauch et al.(2014)
pTH9294
0.889
0.345
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.886
0.387
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC
GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.885
0.359
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.884
0.352
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.884
0.352
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.884
0.352
TCP20
M11397_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.884
0.352
PK14653.1
M01317_2.00
Cannabis sativa
BGGSCCCAC
GTGGGSCCV
PBM
Lambert et al.(2019)
pTH11324
0.882
0.352
PK14653.1
M02517_2.00
Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV
PBM
Weirauch et al.(2014)
pTH9586
0.882
0.352
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC
GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.880
0.331
TCP23
M00891_2.00
Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP23
0.879
0.359
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH
DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.878
0.359
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.876
0.352
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.876
0.352
TCP21
M07292_2.00
Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN
Dap-seq
OMalley et al.(2016)
At5g08330_col_a
0.869
0.359
TCP21
M07293_2.00
Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a
0.869
0.359
OS02G0635800
M02512_2.00
Oryza sativa
NBGGGCCCVN
NBGGGCCCVN
PBM
Weirauch et al.(2014)
pTH8856
0.863
0.366
OsI_08196
M02513_2.00
Oryza sativa
GGGCCCAC
GTGGGCCC
PBM
Weirauch et al.(2014)
pTH9274
0.862
0.352
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00
Arabidopsis lyrata
GRSCCCAC
GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9232
0.860
0.317
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.860
0.310
TCP7
M07294_2.00
Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY
Dap-seq
OMalley et al.(2016)
TCP7_col_a
0.858
0.345
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G37000.1
TCP
41
188
ARTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATGYGTKLISNWVDVAADDSSSSSSMTSPQTQTQTPQSPSCRLDLCQPIGIQYPVNGYSHMPFTAMLLEPMTTTAESEVEIAEEEERRRRHH
Links
Other
TCP
family TFs
Other
Arabidopsis thaliana
TFs
618 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy