Bo6g107240 (Brassica oleracea)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bo6g107240 T343750_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP24
M02499_2.00 		Arabidopsis thaliana
NNNNRVMCVV
BBGKBYNNNN		 PBM
Weirauch et al.(2014)
pTH7337 		0.906 0.331
TCP24
M07272_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP24_colamp_a 		0.906 0.331
TCP24
M07273_2.00 		Arabidopsis thaliana
NNBGGGACCACH
DGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
TCP24_col 		0.906 0.331
TCP24
M02506_2.00 		Arabidopsis lyrata
NBKKNNMMVN
NBKKNNMMVN		 PBM
Weirauch et al.(2014)
pTH9227 		0.905 0.338
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g107240.1 TCP 102 173
Bo6g107240.1 TCP 165 228

Links

Other TCP family TFs
Other Brassica oleracea TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10018773m.g Eutrema salsugineum Thhalv10018773m.g I 0.976
mgf025386m Mimulus guttatus mgf025386m I 0.954
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I 0.952
BRC1 Vitis vinifera VIT_17s0000g04180 I 0.951
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I 0.950
orange1.1g047495m.g Citrus sinensis orange1.1g047495m.g I 0.950
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I 0.949
Cla020670 Citrullus lanatus Cla020670 I 0.946
PGSC0003DMG400010045 Solanum tuberosum PGSC0003DMG400010045 I 0.937
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I 0.934
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I 0.931
Lus10042962.g Linum usitatissimum Lus10042962.g I 0.916
OBART07G03380 Oryza barthii OBART07G03380 I 0.911
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I 0.911
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I 0.908
Bo5g062580 Brassica oleracea Bo5g062580 I 0.907
TCP24 Arabidopsis thaliana AT1G30210 D 0.906
TCP24 Arabidopsis lyrata fgenesh2_kg.1__3195__AT1G30210.2 D 0.905
Bra032365 Brassica rapa Bra032365 I 0.905
BGIOSGA025162 Oryza indica BGIOSGA025162 I 0.904
OS07G0152000 Oryza sativa OS07G0152000 I 0.904
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I 0.903
ORGLA07G0028600 Oryza glaberrima ORGLA07G0028600 I 0.903
ONIVA07G01330 Oryza nivara ONIVA07G01330 I 0.903
OGLUM07G02670 Oryza glumaepatula OGLUM07G02670 I 0.903
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I 0.893
chr3.CM0282.560.nc Lotus japonicus chr3.CM0282.560.nc I 0.888
Thhalv10008175m.g Eutrema salsugineum Thhalv10008175m.g I 0.879
Lus10038512.g Linum usitatissimum Lus10038512.g I 0.876
Lus10017856.g Linum usitatissimum Lus10017856.g I 0.852