CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bra001710
(
Brassica rapa
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
Bra001710
T343764_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.825
0.413
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra001710.1-P
TCP
154
319
PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKITSSLSNPLNHGGFSSCEESQTRPALGSMHTSSDLCKLSSMGTVEDRGSNTNSTETRGNKVDGRSMRGKRKMLQARTPILKKLSKDERAKARERAKDRTKEKLMKR
Links
Other
TCP
family TFs
Other
Brassica rapa
TFs
62 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BRC1
Arabidopsis thaliana
AT3G18550
I
0.976
Thhalv10021948m.g
Eutrema salsugineum
Thhalv10021948m.g
N
0.975
Bo3g071560
Brassica oleracea
Bo3g071560
I
0.974
Bo5g117410
Brassica oleracea
Bo5g117410
N
0.973
BRC1
Arabidopsis lyrata
scaffold_302193.1
N
0.971
Cagra.1681s0023
Capsella grandiflora
Cagra.1681s0023
I
0.970
Carubv10013748m.g
Capsella rubella
Carubv10013748m.g
I
0.970
Bostr.19424s0807
Boechera stricta
Bostr.19424s0807
I
0.969
Bo1g117490
Brassica oleracea
Bo1g117490
I
0.965
Bra037579
Brassica rapa
Bra037579
I
0.965
evm.TU.supercontig_13.48
Carica papaya
evm.TU.supercontig_13.48
N
0.892
Cucsa.113660
Cucumis sativus
Cucsa.113660
N
0.874
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.871
TCM_012252
Theobroma cacao
TCM_012252
I
0.870
Cla019282
Citrullus lanatus
Cla019282
N
0.866
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.865
Cucsa.198860
Cucumis sativus
Cucsa.198860
N
0.864
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.861
MTR_4g111935
Medicago truncatula
MTR_4g111935
I
0.859
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.857
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.855
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.855
MDP0000224810
Malus domestica
MDP0000224810
N
0.852
chr4.LjB15O07.110.nc
Lotus japonicus
chr4.LjB15O07.110.nc
I
0.851
GLYMA05G07943
Glycine max
GLYMA05G07943
I
0.851
GLYMA06G23410
Glycine max
GLYMA06G23410
N
0.850
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.848
Si015230m.g
Setaria italica
Si015230m.g
I
0.845
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.844
30174.m008721
Ricinus communis
30174.m008721
I
0.840
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.840
F775_01923
Aegilops tauschii
F775_01923
I
0.838
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
0.838
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.837
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.837
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.835
MDP0000219838
Malus domestica
MDP0000219838
N
0.834
Traes_5BL_19F383CC71
Triticum aestivum
Traes_5BL_19F383CC71
I
0.834
BRADI3G36590
Brachypodium distachyon
BRADI3G36590
N
0.834
SapurV1A.0301s0010
Salix purpurea
SapurV1A.0301s0010
I
0.834
GRMZM2G055024
Zea mays
GRMZM2G055024
I
0.834
Cla018797
Citrullus lanatus
Cla018797
N
0.833
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
0.833
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.833
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
0.832
SapurV1A.1895s0020
Salix purpurea
SapurV1A.1895s0020
I
0.830
SapurV1A.1895s0010
Salix purpurea
SapurV1A.1895s0010
I
0.830
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
0.829
TRIUR3_20728
Triticum urartu
TRIUR3_20728
I
0.827
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.826
TB1
Oryza sativa
OS03G0706500
D
0.825
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.825
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.825
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.825
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.825
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.825
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.825
LPERR08G12880
Leersia perrieri
LPERR08G12880
I
0.824
MLOC_4614
Hordeum vulgare
MLOC_4614
I
0.823
Si038692m.g
Setaria italica
Si038692m.g
I
0.823
Si033183m.g
Setaria italica
Si033183m.g
I
0.822
OMERI08G12900
Oryza meridionalis
OMERI08G12900
I
0.822