Bra001710 (Brassica rapa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bra001710 T343764_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM

KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.825 0.413
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra001710.1-P TCP 154 319

Links

Other TCP family TFs
Other Brassica rapa TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30174.m008721 Ricinus communis 30174.m008721 I 0.840
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.825
Bo1g117490 Brassica oleracea Bo1g117490 I 0.965
Bo3g071560 Brassica oleracea Bo3g071560 I 0.974
Bo5g117410 Brassica oleracea Bo5g117410 N 0.973
Bostr.19424s0807 Boechera stricta Bostr.19424s0807 I 0.969
Bra037579 Brassica rapa Bra037579 I 0.965
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.834
BRC1 Arabidopsis lyrata scaffold_302193.1 N 0.971
BRC1 Arabidopsis thaliana AT3G18550 I 0.976
Cagra.1681s0023 Capsella grandiflora Cagra.1681s0023 I 0.970
Carubv10013748m.g Capsella rubella Carubv10013748m.g I 0.970
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.857
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.848
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.851
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.855
Cla018797 Citrullus lanatus Cla018797 N 0.833
Cla019282 Citrullus lanatus Cla019282 N 0.866
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.874
Cucsa.198860 Cucumis sativus Cucsa.198860 N 0.864
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.837
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.892
F775_01923 Aegilops tauschii F775_01923 I 0.838
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.861
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.851
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.850
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.871
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.865
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.844
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.834
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.825
LPERR03G25950 Leersia perrieri LPERR03G25950 I 0.838
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.824
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.826
MDP0000219838 Malus domestica MDP0000219838 N 0.834
MDP0000224810 Malus domestica MDP0000224810 N 0.852
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.823
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.859
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.825
OMERI08G12900 Oryza meridionalis OMERI08G12900 I 0.822
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.825
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.833
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.837
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.855
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.825
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I 0.832
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I 0.829
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.833
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.835
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.834
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.840
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.830
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.830
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.825
Si015230m.g Setaria italica Si015230m.g I 0.845
Si033183m.g Setaria italica Si033183m.g I 0.822
Si038692m.g Setaria italica Si038692m.g I 0.823
TB1 Oryza sativa OS03G0706500 D 0.825
TCM_012252 Theobroma cacao TCM_012252 I 0.870
Thhalv10021948m.g Eutrema salsugineum Thhalv10021948m.g N 0.975
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.834
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.827