Bra005967 (Brassica rapa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bra005967 T343770_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.947 0.561
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.945 0.588
TCP17
M07290_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP17_col_a
0.932 0.526
TCP17
M07291_2.00
Arabidopsis thaliana
RTGGGGACCAC

GTGGTCCCCAY
Dap-seq
OMalley et al.(2016)
TCP17_colamp_a
0.932 0.526
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.924 0.456
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.914 0.456
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.914 0.456
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.856 0.386
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN

NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.849 0.412
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH

DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.849 0.412
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN

NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.849 0.412
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.843 0.377
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC

GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.837 0.368
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.832 0.368
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra005967.1-P TCP 37 244

Links

Other TCP family TFs
Other Brassica rapa TFs

318 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BRADI4G07150 Brachypodium distachyon BRADI4G07150 N 0.000
Pavir.J34885 Panicum virgatum Pavir.J34885 N 0.000
OS12G0490000 Oryza sativa OS12G0490000 N 0.000
ORUFI12G13670 Oryza rufipogon ORUFI12G13670 N 0.000
OPUNC12G11140 Oryza punctata OPUNC12G11140 N 0.000
ONIVA03G07590 Oryza nivara ONIVA03G07590 N 0.000
OMERI02G17290 Oryza meridionalis OMERI02G17290 N 0.000
OLONG_006012 Oryza longistaminata OLONG_006012 N 0.000
OGLUM12G14100 Oryza glumaepatula OGLUM12G14100 N 0.000
OB12G20430 Oryza brachyantha OB12G20430 N 0.000
LPERR12G10340 Leersia perrieri LPERR12G10340 N 0.000
Pavir.J40194 Panicum virgatum Pavir.J40194 N 0.000