Bra032365 (Brassica rapa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bra032365 T343793_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP24
M02499_2.00
Arabidopsis thaliana
NNNNRVMCVV

BBGKBYNNNN
PBM
Weirauch et al.(2014)
pTH7337
0.972 0.759
TCP24
M07272_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP24_colamp_a
0.972 0.759
TCP24
M07273_2.00
Arabidopsis thaliana
NNBGGGACCACH

DGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
TCP24_col
0.972 0.759
TCP24
M02506_2.00
Arabidopsis lyrata
NBKKNNMMVN

NBKKNNMMVN
PBM
Weirauch et al.(2014)
pTH9227
0.971 0.737
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra032365.1-P TCP 46 135
Bra032365.1-P TCP 114 160

Links

Other TCP family TFs
Other Brassica rapa TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCP24 Arabidopsis thaliana AT1G30210 D 0.972
TCP24 Arabidopsis lyrata fgenesh2_kg.1__3195__AT1G30210.2 D 0.971
Cla020670 Citrullus lanatus Cla020670 I 0.933
mgf014960m Mimulus guttatus mgf014960m I 0.911
mgf025386m Mimulus guttatus mgf025386m I 0.929
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I 0.972
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I 0.923
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I 0.922
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I 0.917
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I 0.931
Lus10017856.g Linum usitatissimum Lus10017856.g I 0.927
Lus10038512.g Linum usitatissimum Lus10038512.g I 0.964
Lus10042962.g Linum usitatissimum Lus10042962.g I 0.899
orange1.1g047495m.g Citrus sinensis orange1.1g047495m.g I 0.922
Thhalv10008175m.g Eutrema salsugineum Thhalv10008175m.g I 0.974
Thhalv10018773m.g Eutrema salsugineum Thhalv10018773m.g I 0.915
BRC1 Vitis vinifera VIT_17s0000g04180 I 0.940
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I 0.923
PGSC0003DMG400010045 Solanum tuberosum PGSC0003DMG400010045 I 0.933
BGIOSGA025162 Oryza indica BGIOSGA025162 I 0.955
Bo5g062580 Brassica oleracea Bo5g062580 I 0.975
Bo6g107240 Brassica oleracea Bo6g107240 I 0.905
MTR_7g015010 Medicago truncatula MTR_7g015010 I 0.907
OBART07G03380 Oryza barthii OBART07G03380 I 0.960
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I 0.933
OGLUM07G02670 Oryza glumaepatula OGLUM07G02670 I 0.954
ONIVA07G01330 Oryza nivara ONIVA07G01330 I 0.954
ORGLA07G0028600 Oryza glaberrima ORGLA07G0028600 I 0.954
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I 0.947
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I 0.963
OS07G0152000 Oryza sativa OS07G0152000 I 0.955
chr3.CM0282.560.nc Lotus japonicus chr3.CM0282.560.nc I 0.944
GLYMA16G05840 Glycine max GLYMA16G05840 N 0.827
Bo9g052090 Brassica oleracea Bo9g052090 N 0.829