Bra037579 (Brassica rapa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bra037579 T343796_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TB1
M01312_2.00 		Oryza sativa
GGSCCCCCYM
KRGGGGGSCC		 PBM
Lambert et al.(2019)
pTH8740 		0.828 0.404
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra037579.1-P TCP 7 168

Links

Other TCP family TFs
Other Brassica rapa TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo1g117490 Brassica oleracea Bo1g117490 I 0.982
Thhalv10021948m.g Eutrema salsugineum Thhalv10021948m.g N 0.968
Bra001710 Brassica rapa Bra001710 I 0.965
BRC1 Arabidopsis thaliana AT3G18550 I 0.963
Bo3g071560 Brassica oleracea Bo3g071560 I 0.961
Cagra.1681s0023 Capsella grandiflora Cagra.1681s0023 I 0.958
Carubv10013748m.g Capsella rubella Carubv10013748m.g I 0.958
Bo5g117410 Brassica oleracea Bo5g117410 N 0.958
BRC1 Arabidopsis lyrata scaffold_302193.1 N 0.957
Bostr.19424s0807 Boechera stricta Bostr.19424s0807 I 0.949
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.889
TCM_012252 Theobroma cacao TCM_012252 I 0.879
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.877
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.872
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.867
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.866
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.866
Cucsa.198860 Cucumis sativus Cucsa.198860 N 0.864
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.863
Cla018797 Citrullus lanatus Cla018797 N 0.853
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.853
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.852
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.848
Cla019282 Citrullus lanatus Cla019282 N 0.848
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.848
F775_01923 Aegilops tauschii F775_01923 I 0.847
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.844
30174.m008721 Ricinus communis 30174.m008721 I 0.843
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.838
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.837
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.836
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.836
MDP0000219838 Malus domestica MDP0000219838 N 0.836
MDP0000224810 Malus domestica MDP0000224810 N 0.835
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I 0.833
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.833
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.832
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.832
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.832
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.832
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.830
OBART03G31290 Oryza barthii OBART03G31290 I 0.829
OMERI03G27910 Oryza meridionalis OMERI03G27910 I 0.829
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I 0.829
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.829
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.829
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.829
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.828
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.828
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.828
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.828
TB1 Oryza sativa OS03G0706500 D 0.828
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.826
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.825
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.825
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.824
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.823
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.823
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.822