CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCP1
(
Arabidopsis lyrata
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
fgenesh1_pg.C_scaffold_2001059
T343834_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.936
0.553
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.903
0.380
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC
GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.900
0.440
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pg.C_scaffold_2001059
TCP
82
231
VVKKDRHSKIHTAQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLEWLLNKSRKAIKEVVQEKNLNNDDEDFGNNGGDVEEEEEEEEDGDKSFLYGSSPDSCGEKLVCEVKKAEKRKKKSEVSNMSSEGSRAKARGKAKEMAYDHPET
Links
Other
TCP
family TFs
Other
Arabidopsis lyrata
TFs
113 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy