TCP24 (Arabidopsis lyrata)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 fgenesh2_kg.1__3195__AT1G30210.2 T343836_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP24
M02506_2.00		 Arabidopsis lyrata
NBKKNNMMVN
NBKKNNMMVN		 PBM
Weirauch et al.(2014)
pTH9227		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP24
M02499_2.00 		Arabidopsis thaliana
NNNNRVMCVV
BBGKBYNNNN		 PBM
Weirauch et al.(2014)
pTH7337 		0.981 0.926
TCP24
M07272_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP24_colamp_a 		0.981 0.926
TCP24
M07273_2.00 		Arabidopsis thaliana
NNBGGGACCACH
DGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
TCP24_col 		0.981 0.926
For this family, TFs with SR scores > 0.822 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02506_2.00 TCP 48 144
M02506_2.00 TCP 111 165

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__3195__AT1G30210.2 TCP 48 144
fgenesh2_kg.1__3195__AT1G30210.2 TCP 111 165

Links

Other TCP family TFs
Other Arabidopsis lyrata TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I 0.981
TCP24 Arabidopsis thaliana AT1G30210 D 0.981
Bo5g062580 Brassica oleracea Bo5g062580 I 0.974
Bra032365 Brassica rapa Bra032365 I 0.971
Lus10038512.g Linum usitatissimum Lus10038512.g I 0.961
Thhalv10008175m.g Eutrema salsugineum Thhalv10008175m.g I 0.961
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I 0.959
OBART07G03380 Oryza barthii OBART07G03380 I 0.956
OS07G0152000 Oryza sativa OS07G0152000 I 0.952
ORGLA07G0028600 Oryza glaberrima ORGLA07G0028600 I 0.952
ONIVA07G01330 Oryza nivara ONIVA07G01330 I 0.952
BGIOSGA025162 Oryza indica BGIOSGA025162 I 0.952
OGLUM07G02670 Oryza glumaepatula OGLUM07G02670 I 0.952
chr3.CM0282.560.nc Lotus japonicus chr3.CM0282.560.nc I 0.941
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I 0.937
PGSC0003DMG400010045 Solanum tuberosum PGSC0003DMG400010045 I 0.931
BRC1 Vitis vinifera VIT_17s0000g04180 I 0.929
Cla020670 Citrullus lanatus Cla020670 I 0.929
Lus10017856.g Linum usitatissimum Lus10017856.g I 0.924
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I 0.924
mgf025386m Mimulus guttatus mgf025386m I 0.923
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I 0.922
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I 0.920
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I 0.919
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I 0.917
orange1.1g047495m.g Citrus sinensis orange1.1g047495m.g I 0.917
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I 0.917
Thhalv10018773m.g Eutrema salsugineum Thhalv10018773m.g I 0.915
Bo6g107240 Brassica oleracea Bo6g107240 I 0.905
MTR_7g015010 Medicago truncatula MTR_7g015010 I 0.899
Lus10042962.g Linum usitatissimum Lus10042962.g I 0.898
mgf014960m Mimulus guttatus mgf014960m I 0.897