TCP17 (Arabidopsis lyrata)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 fgenesh2_kg.6__773__AT5G08070.1 T343847_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP17
M07290_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP17_col_a
0.972 0.912
TCP17
M07291_2.00
Arabidopsis thaliana
RTGGGGACCAC

GTGGTCCCCAY
Dap-seq
OMalley et al.(2016)
TCP17_colamp_a
0.972 0.912
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.938 0.593
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.938 0.593
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.937 0.725
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.935 0.725
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.926 0.593
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.870 0.484
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.836 0.462
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__773__AT5G08070.1 TCP 31 212

Links

Other TCP family TFs
Other Arabidopsis lyrata TFs

323 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL006998 Aedes aegypti AAEL006998 N 0.000
AALB000924 Anopheles albimanus AALB000924 N 0.000
AARA010926 Anopheles arabiensis AARA010926 N 0.000
AATE011424 Anopheles atroparvus AATE011424 N 0.000
ACHR009597 Anopheles christyi ACHR009597 N 0.000
ACOM040407 Anopheles coluzzii ACOM040407 N 0.000
ADAC002613 Anopheles darlingi ADAC002613 N 0.000
ADIR006855 Anopheles dirus ADIR006855 N 0.000
AEPI007077 Anopheles epiroticus AEPI007077 N 0.000
AFAF002136 Anopheles farauti AFAF002136 N 0.000
AGAP008674 Anopheles gambiae AGAP008674 N 0.000
AMAM017401 Anopheles maculatus AMAM017401 N 0.000
AMEC001325 Anopheles melas AMEC001325 N 0.000
AMEM015553 Anopheles merus AMEM015553 N 0.000
ASIS000631 Anopheles sinensis ASIS000631 N 0.000
BGIBMGA001884 Bombyx mori BGIBMGA001884 N 0.000
CPIJ001573 Culex quinquefasciatus CPIJ001573 N 0.000
CpipJ_CPIJ001573 Culex pipiens CpipJ_CPIJ001573 N 0.000
LCUP009416 Lucilia cuprina LCUP009416 N 0.000