GLYMA19G05921 (Glycine max)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 GLYMA19G05921 T343902_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS

SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.887 0.418
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC

GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.876 0.437
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH

DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.861 0.380
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA19G05921.1 TCP 102 270

Links

Other TCP family TFs
Other Glycine max TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29738.m001041 Ricinus communis 29738.m001041 I 0.911
30167.m000856 Ricinus communis 30167.m000856 I 0.903
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.876
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.869
TCP1 Arabidopsis thaliana AT1G67260 D 0.861
BRC2 Arabidopsis thaliana AT1G68800 I 0.882
Bo2g055640 Brassica oleracea Bo2g055640 I 0.872
Bo2g061250 Brassica oleracea Bo2g061250 I 0.881
Bo6g099040 Brassica oleracea Bo6g099040 I 0.877
Bo6g103670 Brassica oleracea Bo6g103670 I 0.881
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.864
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.836
Bra004097 Brassica rapa Bra004097 I 0.874
Bra004212 Brassica rapa Bra004212 I 0.890
Bra034010 Brassica rapa Bra034010 I 0.880
Bra038350 Brassica rapa Bra038350 I 0.881
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.844
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.864
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.864
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.851
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.906
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.895
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.832
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.945
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.958
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.918
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.828
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.899
Cla002355 Citrullus lanatus Cla002355 I 0.888
Cla007227 Citrullus lanatus Cla007227 I 0.906
Cla016709 Citrullus lanatus Cla016709 I 0.898
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.923
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.892
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.886
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.862
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.848
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.891
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.897
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.898
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.873
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.886
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.876
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.946
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.941
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.981
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.943
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.926
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.883
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.900
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.826
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.843
MDP0000173048 Malus domestica MDP0000173048 I 0.897
MDP0000272980 Malus domestica MDP0000272980 I 0.887
mgf019480m Mimulus guttatus mgf019480m I 0.882
mgf022233m Mimulus guttatus mgf022233m I 0.862
mgf026636m Mimulus guttatus mgf026636m I 0.846
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.918
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.934
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.936
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.828
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.899
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.900
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.841
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.884
PK12240.1 Cannabis sativa PK12240.1 D 0.887
PK19717.1 Cannabis sativa PK19717.1 D 0.876
Pm015499 Prunus mume Pm015499 I 0.864
Pm029002 Prunus mume Pm029002 I 0.896
Pm030202 Prunus mume Pm030202 I 0.822
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.904
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.895
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.823
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.889
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.822
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.896
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.864
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.891
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.886
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.837
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.880
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.906
TCM_011874 Theobroma cacao TCM_011874 I 0.888
TCM_019518 Theobroma cacao TCM_019518 I 0.898
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.869
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.885
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.876