GRMZM2G003944 (Zea mays)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 GRMZM2G003944 T343907_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC

GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.963 0.507
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH

DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.963 0.507
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW

WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.963 0.507
TCP15
M11394_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.963 0.507
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC

GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.961 0.581
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC

GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.960 0.493
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN

NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.959 0.493
TCP23
M00891_2.00
Arabidopsis thaliana
NNGGKCCCAC

GTGGGMCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP23
0.956 0.473
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9232
0.955 0.399
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN

NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.954 0.473
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN

NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.954 0.473
TCP7
M07294_2.00
Arabidopsis thaliana
RTGGGNCCCAC

GTGGGNCCCAY
Dap-seq
OMalley et al.(2016)
TCP7_col_a
0.947 0.419
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC

GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.945 0.378
TCP9
M01086_2.00
Arabidopsis thaliana
NNGGGCCCACN

NGTGGGCCCNN
PBM
Sullivan et al.(2014)
pTH9796
0.945 0.405
TCP9
M07281_2.00
Arabidopsis thaliana
RTGGGDCCCAC

GTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a
0.945 0.405
TCP9
M07282_2.00
Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN

NVNHNHNHHGTGGGYCCCACH
Dap-seq
OMalley et al.(2016)
At2g45680_col_b
0.945 0.405
VIT_15s0048g01150
M02515_2.00
Vitis vinifera
NNGGNCCCAC

GTGGGNCCNN
PBM
Weirauch et al.(2014)
pTH9294
0.945 0.399
PK14653.1
M01317_2.00
Cannabis sativa
BGGSCCCAC

GTGGGSCCV
PBM
Lambert et al.(2019)
pTH11324
0.944 0.419
PK14653.1
M02517_2.00
Cannabis sativa
BTGGGCCCAV

BTGGGCCCAV
PBM
Weirauch et al.(2014)
pTH9586
0.944 0.419
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC

GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.943 0.453
TCP21
M07292_2.00
Arabidopsis thaliana
NNRTGGGDCCCACN

NGTGGGHCCCAYNN
Dap-seq
OMalley et al.(2016)
At5g08330_col_a
0.942 0.399
TCP21
M07293_2.00
Arabidopsis thaliana
RTRGGDCCCACH

DGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a
0.942 0.399
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC

GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.942 0.426
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC

GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.942 0.392
PCF2
M11399_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.941 0.385
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.941 0.399
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN

NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.940 0.385
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC

GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.940 0.385
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH

DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.940 0.385
TCP20
M11397_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.940 0.385
OsI_08196
M02513_2.00
Oryza sativa
GGGCCCAC

GTGGGCCC
PBM
Weirauch et al.(2014)
pTH9274
0.940 0.385
OS02G0635800
M02512_2.00
Oryza sativa
NBGGGCCCVN

NBGGGCCCVN
PBM
Weirauch et al.(2014)
pTH8856
0.940 0.378
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH

DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.928 0.385
TCP11
M11395_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_01
0.897 0.405
TCP11
M11396_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_02
0.897 0.405
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G003944_P01 TCP 112 266

Links

Other TCP family TFs
Other Zea mays TFs

653 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_027_00393 Aquilegia coerulea Aquca_027_00393 N 0.000
evm.TU.supercontig_5.71 Carica papaya evm.TU.supercontig_5.71 N 0.000
Ca_00768 Cicer arietinum Ca_00768 N 0.000
Cla018653 Citrullus lanatus Cla018653 N 0.000
Cucsa.083150 Cucumis sativus Cucsa.083150 N 0.000
Eucgr.K02071 Eucalyptus grandis Eucgr.K02071 N 0.000
gene30159-v1.0-hybrid Fragaria vesca gene30159-v1.0-hybrid N 0.000
GLYMA03G34970 Glycine max GLYMA03G34970 N 0.000
GLYMA19G37670 Glycine max GLYMA19G37670 N 0.000
GLYMA15G02900 Glycine max GLYMA15G02900 N 0.000
GLYMA13G21560 Glycine max GLYMA13G21560 N 0.000
GLYMA10G07740 Glycine max GLYMA10G07740 N 0.000
Gorai.002G159400 Gossypium raimondii Gorai.002G159400 N 0.000
Lus10023873.g Linum usitatissimum Lus10023873.g N 0.000
Lus10014376.g Linum usitatissimum Lus10014376.g N 0.000
MDP0000195376 Malus domestica MDP0000195376 N 0.000
MDP0000833641 Malus domestica MDP0000833641 N 0.000
cassava32861.m1 Manihot esculenta cassava32861.m1 N 0.000
cassava21723.m1 Manihot esculenta cassava21723.m1 N 0.000
POPTR_0016s02010 Populus trichocarpa POPTR_0016s02010 N 0.000
POPTR_0006s02180 Populus trichocarpa POPTR_0006s02180 N 0.000
Pm026227 Prunus mume Pm026227 N 0.000
PRUPE_ppa020711mg Prunus persica PRUPE_ppa020711mg N 0.000
29092.m000462 Ricinus communis 29092.m000462 N 0.000
SapurV1A.0154s0220 Salix purpurea SapurV1A.0154s0220 N 0.000
HRD Vitis vinifera VIT_08s0007g03810 N 0.000