GSMUA_Achr11G17370_001 (Musa acuminata)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 GSMUA_Achr11G17370_001 T343955_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN

NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.944 0.603
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC

GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.944 0.603
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH

DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.944 0.603
TCP20
M11397_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.944 0.603
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.942 0.603
PCF2
M11399_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.942 0.750
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC

GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.942 0.779
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC

GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.940 0.765
PK14653.1
M01317_2.00
Cannabis sativa
BGGSCCCAC

GTGGGSCCV
PBM
Lambert et al.(2019)
pTH11324
0.934 0.824
PK14653.1
M02517_2.00
Cannabis sativa
BTGGGCCCAV

BTGGGCCCAV
PBM
Weirauch et al.(2014)
pTH9586
0.934 0.824
VIT_15s0048g01150
M02515_2.00
Vitis vinifera
NNGGNCCCAC

GTGGGNCCNN
PBM
Weirauch et al.(2014)
pTH9294
0.927 0.809
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH

DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.927 0.603
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9232
0.925 0.794
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC

GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.925 0.632
TCP9
M01086_2.00
Arabidopsis thaliana
NNGGGCCCACN

NGTGGGCCCNN
PBM
Sullivan et al.(2014)
pTH9796
0.925 0.779
TCP9
M07281_2.00
Arabidopsis thaliana
RTGGGDCCCAC

GTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a
0.925 0.779
TCP9
M07282_2.00
Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN

NVNHNHNHHGTGGGYCCCACH
Dap-seq
OMalley et al.(2016)
At2g45680_col_b
0.925 0.779
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC

GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.924 0.632
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC

GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.909 0.618
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC

GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.907 0.603
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN

NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.907 0.603
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH

DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.907 0.603
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW

WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.907 0.603
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC

GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.907 0.603
TCP15
M11394_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.907 0.603
TCP23
M00891_2.00
Arabidopsis thaliana
NNGGKCCCAC

GTGGGMCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP23
0.906 0.588
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN

NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.903 0.588
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN

NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.903 0.588
TCP7
M07294_2.00
Arabidopsis thaliana
RTGGGNCCCAC

GTGGGNCCCAY
Dap-seq
OMalley et al.(2016)
TCP7_col_a
0.896 0.574
OsI_08196
M02513_2.00
Oryza sativa
GGGCCCAC

GTGGGCCC
PBM
Weirauch et al.(2014)
pTH9274
0.896 0.559
TCP21
M07292_2.00
Arabidopsis thaliana
NNRTGGGDCCCACN

NGTGGGHCCCAYNN
Dap-seq
OMalley et al.(2016)
At5g08330_col_a
0.896 0.559
TCP21
M07293_2.00
Arabidopsis thaliana
RTRGGDCCCACH

DGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a
0.896 0.559
OS02G0635800
M02512_2.00
Oryza sativa
NBGGGCCCVN

NBGGGCCCVN
PBM
Weirauch et al.(2014)
pTH8856
0.896 0.559
TCP11
M11395_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_01
0.831 0.485
TCP11
M11396_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_02
0.831 0.485
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr11P17370_001 TCP 1 106

Links

Other TCP family TFs
Other Musa acuminata TFs

648 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_23111 Aegilops tauschii F775_23111 I 0.000
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.000
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.000
ERF017 Arabidopsis thaliana AT1G19210 D 0.000
ERF018 Arabidopsis thaliana AT1G74930 D 0.000
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.000
BRADI3G37544 Brachypodium distachyon BRADI3G37544 I 0.000
Bo6g086740 Brassica oleracea Bo6g086740 I 0.000
Bo6g119120 Brassica oleracea Bo6g119120 I 0.000
Bo8g102870 Brassica oleracea Bo8g102870 I 0.000
Bra031069 Brassica rapa Bra031069 I 0.000
Bra003780 Brassica rapa Bra003780 I 0.000
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.000
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.000
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.000
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.000
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.000
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.000
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.000
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.000
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.000
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.000
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.000
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.000
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.000
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.000
mgf017314m Mimulus guttatus mgf017314m N 0.000
mgf024162m Mimulus guttatus mgf024162m I 0.000
mgf021940m Mimulus guttatus mgf021940m I 0.000
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.000
OBART08G16950 Oryza barthii OBART08G16950 I 0.000
OBART06G06190 Oryza barthii OBART06G06190 I 0.000
OB06G15740 Oryza brachyantha OB06G15740 N 0.000
OB08G24280 Oryza brachyantha OB08G24280 I 0.000
ORGLA06G0057200 Oryza glaberrima ORGLA06G0057200 I 0.000
OGLUM06G06520 Oryza glumaepatula OGLUM06G06520 I 0.000
OGLUM06G08330 Oryza glumaepatula OGLUM06G08330 N 0.000
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.000
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.000
BGIOSGA022471 Oryza indica BGIOSGA022471 I 0.000
OMERI03G32210 Oryza meridionalis OMERI03G32210 I 0.000
OMERI06G09430 Oryza meridionalis OMERI06G09430 N 0.000
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.000
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.000
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.000
ORUFI06G06480 Oryza rufipogon ORUFI06G06480 I 0.000
OS08G0454000 Oryza sativa OS08G0454000 I 0.000
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.000
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.000
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.000
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I 0.000
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.000
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.000
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.000
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.000
Si008104m.g Setaria italica Si008104m.g I 0.000
Si019636m.g Setaria italica Si019636m.g I 0.000
Si015027m.g Setaria italica Si015027m.g I 0.000
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.000
Solyc07g042230.1 Solanum lycopersicum Solyc07g042230.1 N 0.000
PGSC0003DMG400023295 Solanum tuberosum PGSC0003DMG400023295 N 0.000
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.000
TCM_037486 Theobroma cacao TCM_037486 I 0.000
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I 0.000
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.000
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.000
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.000
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.000