GSMUA_Achr7G02680_001 (Musa acuminata)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 GSMUA_Achr7G02680_001 T343980_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN

NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.974 0.800
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC

GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.974 0.800
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH

DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.974 0.800
TCP20
M11397_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.974 0.800
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.973 0.800
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH

DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.965 0.812
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC

GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.964 0.825
PCF2
M11399_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.963 0.713
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC

GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.963 0.825
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC

GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.963 0.700
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC

GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.957 0.675
PK14653.1
M01317_2.00
Cannabis sativa
BGGSCCCAC

GTGGGSCCV
PBM
Lambert et al.(2019)
pTH11324
0.950 0.700
PK14653.1
M02517_2.00
Cannabis sativa
BTGGGCCCAV

BTGGGCCCAV
PBM
Weirauch et al.(2014)
pTH9586
0.950 0.700
VIT_15s0048g01150
M02515_2.00
Vitis vinifera
NNGGNCCCAC

GTGGGNCCNN
PBM
Weirauch et al.(2014)
pTH9294
0.950 0.713
TCP9
M01086_2.00
Arabidopsis thaliana
NNGGGCCCACN

NGTGGGCCCNN
PBM
Sullivan et al.(2014)
pTH9796
0.950 0.713
TCP9
M07281_2.00
Arabidopsis thaliana
RTGGGDCCCAC

GTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a
0.950 0.713
TCP9
M07282_2.00
Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN

NVNHNHNHHGTGGGYCCCACH
Dap-seq
OMalley et al.(2016)
At2g45680_col_b
0.950 0.713
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC

GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.949 0.750
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN

NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.949 0.738
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC

GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.946 0.738
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC

GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.945 0.700
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH

DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.945 0.700
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW

WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.945 0.700
TCP15
M11394_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.945 0.700
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9232
0.942 0.688
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN

NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.942 0.713
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN

NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.942 0.713
TCP23
M00891_2.00
Arabidopsis thaliana
NNGGKCCCAC

GTGGGMCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP23
0.938 0.700
TCP21
M07292_2.00
Arabidopsis thaliana
NNRTGGGDCCCACN

NGTGGGHCCCAYNN
Dap-seq
OMalley et al.(2016)
At5g08330_col_a
0.929 0.662
TCP21
M07293_2.00
Arabidopsis thaliana
RTRGGDCCCACH

DGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a
0.929 0.662
TCP7
M07294_2.00
Arabidopsis thaliana
RTGGGNCCCAC

GTGGGNCCCAY
Dap-seq
OMalley et al.(2016)
TCP7_col_a
0.929 0.662
OsI_08196
M02513_2.00
Oryza sativa
GGGCCCAC

GTGGGCCC
PBM
Weirauch et al.(2014)
pTH9274
0.917 0.613
OS02G0635800
M02512_2.00
Oryza sativa
NBGGGCCCVN

NBGGGCCCVN
PBM
Weirauch et al.(2014)
pTH8856
0.917 0.625
TCP11
M11395_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_01
0.873 0.600
TCP11
M11396_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_02
0.873 0.600
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr7P02680_001 TCP 76 155

Links

Other TCP family TFs
Other Musa acuminata TFs

661 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29790.m000843 Ricinus communis 29790.m000843 I 0.000
30138.m003899 Ricinus communis 30138.m003899 I 0.000
30138.m003913 Ricinus communis 30138.m003913 I 0.000
ALC Arabidopsis lyrata fgenesh2_kg.8__2705__AT5G67110.1 I 0.000
ALC Arabidopsis thaliana AT5G67110 I 0.000
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.000
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.000
Aquca_006_00387 Aquilegia coerulea Aquca_006_00387 I 0.000
BGIOSGA022375 Oryza indica BGIOSGA022375 I 0.000
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.000
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.000
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.000
BIM1 Arabidopsis thaliana AT5G08130 D 0.000
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.000
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I 0.000
BIM2 Arabidopsis thaliana AT1G69010 D 0.000
BIM3 Arabidopsis thaliana AT5G38860 D 0.000
BIM3 Arabidopsis lyrata scaffold_704174.1 I 0.000
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.000
Bo2g062560 Brassica oleracea Bo2g062560 I 0.000
Bo2g161110 Brassica oleracea Bo2g161110 I 0.000
Bo3g004690 Brassica oleracea Bo3g004690 I 0.000
Bo5g020460 Brassica oleracea Bo5g020460 I 0.000
Bo6g108530 Brassica oleracea Bo6g108530 I 0.000
Bo9g174770 Brassica oleracea Bo9g174770 I 0.000
Bostr.0568s0133 Boechera stricta Bostr.0568s0133 I 0.000
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I 0.000
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.000
Bra004355 Brassica rapa Bra004355 I 0.000
Bra005969 Brassica rapa Bra005969 I 0.000
Bra009322 Brassica rapa Bra009322 I 0.000
Bra012133 Brassica rapa Bra012133 I 0.000
Bra029354 Brassica rapa Bra029354 I 0.000
Bra038332 Brassica rapa Bra038332 I 0.000
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.000
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I 0.000
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.000
Cagra.2539s0002 Capsella grandiflora Cagra.2539s0002 I 0.000
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.000
Carubv10006445m.g Capsella rubella Carubv10006445m.g I 0.000
Carubv10020679m.g Capsella rubella Carubv10020679m.g I 0.000
Carubv10028570m.g Capsella rubella Carubv10028570m.g I 0.000
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.000
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.000
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.000
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.000
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.000
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.000
Ca_19269 Cicer arietinum Ca_19269 I 0.000
Ciclev10012135m.g Citrus clementina Ciclev10012135m.g I 0.000
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.000
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.000
Cla018818 Citrullus lanatus Cla018818 I 0.000
Cla022382 Citrullus lanatus Cla022382 I 0.000
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.000
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.000
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.000
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.000
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.000
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.000
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I 0.000
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.000
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.000
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.000
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.000
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.000
gene09125-v1.0-hybrid Fragaria vesca gene09125-v1.0-hybrid I 0.000
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I 0.000
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.000
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.000
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.000
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.000
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.000
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.000
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.000
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I 0.000
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I 0.000
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I 0.000
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I 0.000
GRMZM2G017349 Zea mays GRMZM2G017349 I 0.000
GRMZM2G172795 Zea mays GRMZM2G172795 I 0.000
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.000
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.000
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.000
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.000
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.000
LPERR04G17400 Leersia perrieri LPERR04G17400 I 0.000
LPERR06G03910 Leersia perrieri LPERR06G03910 I 0.000
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.000
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.000
Lus10034358.g Linum usitatissimum Lus10034358.g I 0.000
MDP0000261293 Malus domestica MDP0000261293 I 0.000
mgf001137m Mimulus guttatus mgf001137m I 0.000
mgf005849m Mimulus guttatus mgf005849m I 0.000
mgf011829m Mimulus guttatus mgf011829m I 0.000
mgf013208m Mimulus guttatus mgf013208m I 0.000
MTR_1g019240 Medicago truncatula MTR_1g019240 I 0.000
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.000
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.000
MTR_7g017320 Medicago truncatula MTR_7g017320 I 0.000
OB08G25940 Oryza brachyantha OB08G25940 I 0.000
OBART06G04330 Oryza barthii OBART06G04330 I 0.000
OGLUM06G04430 Oryza glumaepatula OGLUM06G04430 I 0.000
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.000
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.000
OMERI06G05430 Oryza meridionalis OMERI06G05430 I 0.000
ONIVA06G05510 Oryza nivara ONIVA06G05510 I 0.000
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.000
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.000
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I 0.000
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.000
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.000
ORGLA06G0039900 Oryza glaberrima ORGLA06G0039900 I 0.000
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.000
ORUFI06G04330 Oryza rufipogon ORUFI06G04330 I 0.000
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.000
OS08G0490000 Oryza sativa OS08G0490000 I 0.000
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.000
Pavir.J15575 Panicum virgatum Pavir.J15575 I 0.000
Pavir.J38250 Panicum virgatum Pavir.J38250 I 0.000
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.000
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.000
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.000
PGSC0003DMG401007955 Solanum tuberosum PGSC0003DMG401007955 I 0.000
PK00238.1 Cannabis sativa PK00238.1 I 0.000
PK01364.1 Cannabis sativa PK01364.1 I 0.000
PK10562.1 Cannabis sativa PK10562.1 I 0.000
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.000
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.000
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.000
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I 0.000
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.000
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I 0.000
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.000
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.000
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I 0.000
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.000
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.000
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.000
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.000
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.000
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.000
Sb06g025040 Sorghum bicolor Sb06g025040 I 0.000
Sb06g025060 Sorghum bicolor Sb06g025060 I 0.000
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.000
Sb10g004500 Sorghum bicolor Sb10g004500 I 0.000
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.000
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.000
Si000845m.g Setaria italica Si000845m.g I 0.000
Si012401m.g Setaria italica Si012401m.g I 0.000
Si013622m.g Setaria italica Si013622m.g I 0.000
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.000
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.000
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.000
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.000
TCM_011433 Theobroma cacao TCM_011433 I 0.000
TCM_014392 Theobroma cacao TCM_014392 I 0.000
TCM_019015 Theobroma cacao TCM_019015 I 0.000
Thhalv10004889m.g Eutrema salsugineum Thhalv10004889m.g I 0.000
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.000
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I 0.000
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.000
Traes_7DL_04FC0BF21 Triticum aestivum Traes_7DL_04FC0BF21 N 0.000