CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LPERR03G25950
(
Leersia perrieri
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
LPERR03G25950
T344000_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.957
0.631
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LPERR03G25950.1
TCP
98
254
AARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMSDDASSVVCEDDGGSSSLSVDAAAGSKHHTNTNNPPGAAAEGKKPAAAAKSRRAAATPKPPRRLSNAHLPVPDKESRAKARERARERTREKNRMR
Links
Other
TCP
family TFs
Other
Leersia perrieri
TFs
87 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OMERI03G27910
Oryza meridionalis
OMERI03G27910
I
0.964
OBART03G31290
Oryza barthii
OBART03G31290
I
0.964
ORGLA03G0289500
Oryza glaberrima
ORGLA03G0289500
I
0.964
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.957
TB1
Oryza sativa
OS03G0706500
D
0.957
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.957
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.957
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.957
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
0.953
Pavir.Ia00838
Panicum virgatum
Pavir.Ia00838
I
0.952
Si038692m.g
Setaria italica
Si038692m.g
I
0.950
BRADI1G11060
Brachypodium distachyon
BRADI1G11060
I
0.945
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.945
OPUNC03G28490
Oryza punctata
OPUNC03G28490
I
0.941
AC233950.1_FG002
Zea mays
AC233950.1_FG002
I
0.941
Traes_4BS_DC076554D
Triticum aestivum
Traes_4BS_DC076554D
I
0.932
Traes_4DS_59A46B69A
Triticum aestivum
Traes_4DS_59A46B69A
I
0.931
Traes_4AL_75D069945
Triticum aestivum
Traes_4AL_75D069945
I
0.931
TRIUR3_31795
Triticum urartu
TRIUR3_31795
I
0.931
MLOC_70116
Hordeum vulgare
MLOC_70116
I
0.928
AC190734.2_FG003
Zea mays
AC190734.2_FG003
I
0.912
OB03G38320
Oryza brachyantha
OB03G38320
I
0.867
Si015230m.g
Setaria italica
Si015230m.g
I
0.861
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.858
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.858
OBART09G10040
Oryza barthii
OBART09G10040
I
0.858
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.858
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.858
OS09G0410500
Oryza sativa
OS09G0410500
I
0.858
Bo3g071560
Brassica oleracea
Bo3g071560
I
0.856
Cagra.1681s0023
Capsella grandiflora
Cagra.1681s0023
I
0.854
Carubv10013748m.g
Capsella rubella
Carubv10013748m.g
I
0.854
GSMUA_Achr2G21050_001
Musa acuminata
GSMUA_Achr2G21050_001
I
0.854
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
0.853
Traes_5BL_19F383CC71
Triticum aestivum
Traes_5BL_19F383CC71
I
0.850
Bostr.19424s0807
Boechera stricta
Bostr.19424s0807
I
0.848
TRIUR3_20728
Triticum urartu
TRIUR3_20728
I
0.847
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.846
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
0.846
Pavir.Fa00870
Panicum virgatum
Pavir.Fa00870
I
0.845
Sb07g021140
Sorghum bicolor
Sb07g021140
I
0.845
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.843
MLOC_58142
Hordeum vulgare
MLOC_58142
I
0.842
GSMUA_Achr10G25520_001
Musa acuminata
GSMUA_Achr10G25520_001
I
0.842
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
0.840
BRADI4G29980
Brachypodium distachyon
BRADI4G29980
I
0.838
Bra001710
Brassica rapa
Bra001710
I
0.838
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.838
OMERI08G12900
Oryza meridionalis
OMERI08G12900
I
0.838
Bo5g117410
Brassica oleracea
Bo5g117410
N
0.838
F775_01923
Aegilops tauschii
F775_01923
I
0.837
evm.TU.supercontig_179.29
Carica papaya
evm.TU.supercontig_179.29
I
0.837
MDP0000224810
Malus domestica
MDP0000224810
N
0.837
Pavir.Ba01820
Panicum virgatum
Pavir.Ba01820
I
0.836
GRMZM2G110242
Zea mays
GRMZM2G110242
I
0.836
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.836
BRADI3G36590
Brachypodium distachyon
BRADI3G36590
N
0.836
GRMZM2G055024
Zea mays
GRMZM2G055024
I
0.835
LPERR08G12880
Leersia perrieri
LPERR08G12880
I
0.835
Thhalv10021948m.g
Eutrema salsugineum
Thhalv10021948m.g
N
0.834
Thhalv10019499m.g
Eutrema salsugineum
Thhalv10019499m.g
I
0.834
BRC1
Arabidopsis thaliana
AT3G18550
I
0.834
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.834
MLOC_4614
Hordeum vulgare
MLOC_4614
I
0.832
ORGLA08G0137200
Oryza glaberrima
ORGLA08G0137200
I
0.832
ONIVA08G16720
Oryza nivara
ONIVA08G16720
I
0.832
Traes_5DL_46A3B0DAB1
Triticum aestivum
Traes_5DL_46A3B0DAB1
I
0.831
Pavir.Bb02154
Panicum virgatum
Pavir.Bb02154
I
0.830
30174.m008721
Ricinus communis
30174.m008721
I
0.830
OS08G0432300
Oryza sativa
OS08G0432300
I
0.829
ORUFI08G17540
Oryza rufipogon
ORUFI08G17540
I
0.829
OGLUM08G16380
Oryza glumaepatula
OGLUM08G16380
I
0.829
Si033183m.g
Setaria italica
Si033183m.g
I
0.829
BGIOSGA028717
Oryza indica
BGIOSGA028717
I
0.829
Cla019282
Citrullus lanatus
Cla019282
N
0.829
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.827
GSMUA_Achr2G22480_001
Musa acuminata
GSMUA_Achr2G22480_001
I
0.827
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.826
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.826
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.826
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.824
BRC1
Arabidopsis lyrata
scaffold_302193.1
N
0.823
Gorai.008G186800
Gossypium raimondii
Gorai.008G186800
I
0.823
POPTR_0010s14030
Populus trichocarpa
POPTR_0010s14030
I
0.822
POPTR_0008s11470
Populus trichocarpa
POPTR_0008s11470
I
0.822
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.822
Pm030202
Prunus mume
Pm030202
I
0.822