LPERR07G02820 (Leersia perrieri)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 LPERR07G02820 T344006_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC

GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.925 0.520
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.924 0.547
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN

NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.921 0.520
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.883 0.338
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC

GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.883 0.338
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN

NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.879 0.331
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH

DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.879 0.331
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN

NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.879 0.331
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.879 0.351
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.869 0.318
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.869 0.318
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.868 0.378
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.865 0.318
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.859 0.304
TCP17
M07290_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP17_col_a
0.855 0.297
TCP17
M07291_2.00
Arabidopsis thaliana
RTGGGGACCAC

GTGGTCCCCAY
Dap-seq
OMalley et al.(2016)
TCP17_colamp_a
0.855 0.297
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LPERR07G02820.1 TCP 55 202
LPERR07G02820.2 TCP 55 202
LPERR07G02820.3 TCP 55 202
LPERR07G02820.5 TCP 55 202

Links

Other TCP family TFs
Other Leersia perrieri TFs

443 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F443_17364 Phytophthora parasitica F443_17364 N 0.000
PITG_05128 Phytophthora infestans PITG_05128 N 0.000
Physo156477 Phytophthora sojae Physo156477 N 0.000
maker-pve_contig_552-snap-gene-0.10 Pythium vexans maker-pve_contig_552-snap-gene-0.10 N 0.000
maker-pir_contig_358-snap-gene-0.9 Pythium irregulare maker-pir_contig_358-snap-gene-0.9 N 0.000
maker-par_contig_1990-snap-gene-0.1 Pythium arrhenomanes maker-par_contig_1990-snap-gene-0.1 N 0.000
maker-pag1_scaffold_54-snap-gene-0.45 Pythium aphanidermatum maker-pag1_scaffold_54-snap-gene-0.45 N 0.000
HpaG805666 Hyaloperonospora arabidopsidis HpaG805666 N 0.000
fgenesh_scip_prom.28083.8685 Phytophthora lateralis fgenesh_scip_prom.28083.8685 N 0.000
snap_masked-piw_contig_146-abinit-gene-0.19 Pythium iwayamai snap_masked-piw_contig_146-abinit-gene-0.19 N 0.000