CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MLOC_60577
(
Hordeum vulgare
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
MLOC_60577
T344023_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.943
0.598
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.941
0.538
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.941
0.538
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.941
0.538
TCP15
M11394_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.964
0.578
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.963
0.563
TCP23
M00891_2.00
Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP23
0.940
0.564
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.928
0.479
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.958
0.444
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.928
0.479
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.927
0.513
PCF2
M11399_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.922
0.385
TCP21
M07292_2.00
Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN
Dap-seq
OMalley et al.(2016)
At5g08330_col_a
0.946
0.444
PK14653.1
M01317_2.00
Cannabis sativa
BGGSCCCAC
GTGGGSCCV
PBM
Lambert et al.(2019)
pTH11324
0.919
0.376
TCP21
M07293_2.00
Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a
0.946
0.444
PK14653.1
M02517_2.00
Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV
PBM
Weirauch et al.(2014)
pTH9586
0.919
0.376
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC
GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.945
0.422
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00
Arabidopsis lyrata
GRSCCCAC
GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9232
0.916
0.376
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.916
0.350
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.916
0.350
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.916
0.350
TCP20
M11397_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.916
0.350
TCP7
M07294_2.00
Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY
Dap-seq
OMalley et al.(2016)
TCP7_col_a
0.943
0.452
OsI_08196
M02513_2.00
Oryza sativa
GGGCCCAC
GTGGGCCC
PBM
Weirauch et al.(2014)
pTH9274
0.916
0.368
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC
GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.943
0.422
OS02G0635800
M02512_2.00
Oryza sativa
NBGGGCCCVN
NBGGGCCCVN
PBM
Weirauch et al.(2014)
pTH8856
0.916
0.359
VIT_15s0048g01150
M02515_2.00
Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN
PBM
Weirauch et al.(2014)
pTH9294
0.942
0.452
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.942
0.444
TCP9
M01086_2.00
Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN
PBM
Sullivan et al.(2014)
pTH9796
0.941
0.437
TCP9
M07281_2.00
Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a
0.941
0.437
TCP9
M07282_2.00
Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH
Dap-seq
OMalley et al.(2016)
At2g45680_col_b
0.941
0.437
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH
DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.912
0.393
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC
GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.940
0.459
TCP11
M11395_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_01
0.881
0.436
TCP11
M11396_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_02
0.881
0.436
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MLOC_60577.1
TCP
1
159
MPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSMLSTIPAHLRAAGLPGSRFGGGPRADAWDRFVGLGFGGGLESPASTTTSSSSPLLLSFHSGSVGLDVSPSSSAAAASTELSRKRRWEQEMQQQQQQHH
MLOC_60577.2
TCP
57
256
TTSKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSMLSTIPAHLRAAGLPGSRFGGGPRADAWDRFVGLGFGGGLESPASTTTSSSSPLLLSFHSGSVGLDVSPSSSAAAASTELSRKRRWEQEMQQQQQQHHQHQQQQQQQYQQQMAGYTQSQMP
MLOC_60577.3
TCP
57
256
TTSKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSMLSTIPAHLRAAGLPGSRFGGGPRADAWDRFVGLGFGGGLESPASTTTSSSSPLLLSFHSGSVGLDVSPSSSAAAASTELSRKRRWEQEMQQQQQQHHQHQQQQQQQYQQQMAGYTQSQMP
Links
Other
TCP
family TFs
Other
Hordeum vulgare
TFs
660 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
A1Q1_02234
Trichosporon asahii
A1Q1_02234
I
0.000
ACRE_010220
Acremonium chrysogenum
ACRE_010220
I
0.000
AMAG_13560
Allomyces macrogynus
AMAG_13560
I
0.000
AMAG_13812
Allomyces macrogynus
AMAG_13812
I
0.000
ATEG_07814
Aspergillus terreus
CADATEAG00001961
I
0.000
AUEXF2481DRAFT_28704
Aureobasidium subglaciale
AUEXF2481DRAFT_28704
I
0.000
BN946_scf184796.g4
Trametes cinnabarina
BN946_scf184796.g4
I
0.000
BOTBODRAFT_182611
Botryobasidium botryosum
BOTBODRAFT_182611
I
0.000
CC1G_07415
Coprinopsis cinerea
CC1G_07415
I
0.000
CERSUDRAFT_114103
Ceriporiopsis subvermispora
CERSUDRAFT_114103
I
0.000
CND03290
Cryptococcus neoformans
CND03290
I
0.000
CPUR_08669
Claviceps purpurea
CPUR_08669
I
0.000
CY34DRAFT_54046
Suillus luteus
CY34DRAFT_54046
I
0.000
DACRYDRAFT_48176
Dacryopinax sp
DACRYDRAFT_48176
I
0.000
DI09_24p280
Microsporidia sp
DI09_24p280
N
0.000
EDP44549.1
Malassezia globosa
EDP44549.1
I
0.000
estExt_fgenesh1_pg.C_120063
Sporobolomyces roseus
estExt_fgenesh1_pg.C_120063
I
0.000
estExt_fgeneshPB_pg.C_250119
Phycomyces blakesleeanus
estExt_fgeneshPB_pg.C_250119
I
0.000
EURHEDRAFT_381770
Aspergillus ruber
EURHEDRAFT_381770
I
0.000
fgeneshMC_pg.10_#_374
Mucor circinelloides
fgeneshMC_pg.10_#_374
I
0.000
fgeneshMC_pg.11_#_166
Mucor circinelloides
fgeneshMC_pg.11_#_166
I
0.000
fgeneshPB_pg.4__282
Phycomyces blakesleeanus
fgeneshPB_pg.4__282
I
0.000
fgeneshTM_pg.1_#_1734
Tremella mesenterica
fgeneshTM_pg.1_#_1734
I
0.000
FIBRA_08626
Fibroporia radiculosa
FIBRA_08626
I
0.000
FOMPIDRAFT_1123646
Fomitopsis pinicola
FOMPIDRAFT_1123646
I
0.000
GALMADRAFT_123329
Galerina marginata
GALMADRAFT_123329
I
0.000
GLOINDRAFT_349601
Rhizophagus irregularis
GLOINDRAFT_349601
I
0.000
GLOTRDRAFT_21409
Gloeophyllum trabeum
GLOTRDRAFT_21409
I
0.000
gwh2.6.574.1
Phanerochaete chrysosporium
gwh2.6.574.1
I
0.000
HETIRDRAFT_248206
Heterobasidion irregulare
HETIRDRAFT_248206
I
0.000
J056_003714
Wallemia ichthyophaga
J056_003714
I
0.000
JAAARDRAFT_97747
Jaapia argillacea
JAAARDRAFT_97747
I
0.000
K437DRAFT_221438
Tilletiaria anomala
K437DRAFT_221438
N
0.000
K443DRAFT_676702
Laccaria amethystina
K443DRAFT_676702
I
0.000
L804_00322
Cryptococcus gattii
L804_00322
I
0.000
LELG_00868
Lodderomyces elongisporus
LELG_00868
I
0.000
M378DRAFT_52467
Amanita muscaria
M378DRAFT_52467
I
0.000
M404DRAFT_68462
Pisolithus tinctorius
M404DRAFT_68462
I
0.000
M407DRAFT_54328
Tulasnella calospora
M407DRAFT_54328
I
0.000
M408DRAFT_66182
Serendipita vermifera
M408DRAFT_66182
I
0.000
M413DRAFT_24434
Hebeloma cylindrosporum
M413DRAFT_24434
I
0.000
MAC_08141
Metarhizium acridum
MAC_08141
I
0.000
MAJ_00916
Metarhizium majus
MAJ_00916
I
0.000
MAM_05750
Metarhizium album
MAM_05750
I
0.000
MANI_001834
Metarhizium anisopliae
MANI_001834
I
0.000
MBR_03191
Metarhizium brunneum
MBR_03191
I
0.000
MGU_03004
Metarhizium guizhouense
MGU_03004
I
0.000
Moror_8992
Moniliophthora roreri
Moror_8992
I
0.000
MSY001_2604
Malassezia sympodialis
MSY001_2604
I
0.000
MVLG_01455
Microbotryum violaceum
MVLG_01455
I
0.000
O9G_001320
Rozella allomycis
O9G_001320
I
0.000
PaG_02568
Pseudozyma aphidis
PaG_02568
N
0.000
PAS_chr3_0766
Komagataella pastoris
PAS_chr3_0766
I
0.000
PAXRUDRAFT_147875
Paxillus rubicundulus
PAXRUDRAFT_147875
I
0.000
PFL1_05889
Pseudozyma flocculosa
PFL1_05889
I
0.000
PHACADRAFT_54766
Phanerochaete carnosa
PHACADRAFT_54766
I
0.000
PHLGIDRAFT_43379
Phlebiopsis gigantea
PHLGIDRAFT_43379
I
0.000
php2
Schizosaccharomyces pombe
SPBC725.11c
I
0.000
PHSY_003968
Pseudozyma hubeiensis
PHSY_003968
N
0.000
PIIN_00087
Piriformospora indica
PIIN_00087
I
0.000
PILCRDRAFT_824094
Piloderma croceum
PILCRDRAFT_824094
I
0.000
PISMIDRAFT_40699
Pisolithus microcarpus
PISMIDRAFT_40699
I
0.000
PLEOSDRAFT_1027012
Pleurotus ostreatus
PLEOSDRAFT_1027012
I
0.000
POSPLDRAFT_42451
Postia placenta
POSPLDRAFT_42451
I
0.000
PSEUBRA_SCAF2g02687
Pseudozyma brasiliensis
PSEUBRA_SCAF2g02687
N
0.000
RHTO_00634
Rhodosporidium toruloides
RHTO_00634
I
0.000
RO3G_00980
Rhizopus oryzae
RO3G_00980
I
0.000
RO3G_16178
Rhizopus oryzae
RO3G_16178
I
0.000
RTG_01693
Rhodotorula glutinis
RTG_01693
I
0.000
S40285_00742
Stachybotrys chlorohalonata
S40285_00742
I
0.000
S40288_04573
Stachybotrys chartarum
S40288_04573
I
0.000
SCHCODRAFT_110229
Schizophyllum commune
SCHCODRAFT_110229
I
0.000
SCLCIDRAFT_62922
Scleroderma citrinum
SCLCIDRAFT_62922
I
0.000
SERLA73DRAFT_72938
Serpula lacrymans
SERLA73DRAFT_72938
I
0.000
SJAG_00698
Schizosaccharomyces japonicus
SJAG_00698
I
0.000
SOCG_03424
Schizosaccharomyces octosporus
SOCG_03424
I
0.000
SPOG_04316
Schizosaccharomyces cryophilus
SPOG_04316
I
0.000
SPPG_06102
Spizellomyces punctatus
SPPG_06102
I
0.000
TRIATDRAFT_259021
Trichoderma atroviride
TRIATDRAFT_259021
I
0.000
TRIREDRAFT_124286
Trichoderma reesei
TRIREDRAFT_124286
I
0.000
TRIVIDRAFT_175433
Trichoderma virens
TRIVIDRAFT_175433
I
0.000
UHOR_02364
Ustilago hordei
UHOR_02364
N
0.000
UM01597
Ustilago maydis
UM01597
N
0.000
UV8b_4419
Ustilaginoidea virens
UV8b_4419
I
0.000
V565_064680
Rhizoctonia solani
V565_064680
I
0.000
VHEMI02644
Torrubiella hemipterigena
VHEMI02644
I
0.000
WALSEDRAFT_57633
Wallemia sebi
WALSEDRAFT_57633
I
0.000
X797_004191
Metarhizium robertsii
X797_004191
I
0.000
XP_002492996.1
Pichia pastoris
XP_002492996.1
I
0.000