MTR_4g111935 (Medicago truncatula)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 MTR_4g111935 T344043_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS

SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.826 0.373
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH

DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.824 0.401
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH32084 TCP 130 272

Links

Other TCP family TFs
Other Medicago truncatula TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.952
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.950
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.928
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.916
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.906
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.892
TCM_012252 Theobroma cacao TCM_012252 I 0.886
Cucsa.198860 Cucumis sativus Cucsa.198860 N 0.879
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.879
LjSGA_018294.2 Lotus japonicus LjSGA_018294.2 I 0.879
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.876
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.876
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.871
Cla019282 Citrullus lanatus Cla019282 N 0.868
BRC1 Arabidopsis thaliana AT3G18550 I 0.867
Thhalv10021948m.g Eutrema salsugineum Thhalv10021948m.g N 0.867
Bo1g117490 Brassica oleracea Bo1g117490 I 0.866
Bra037579 Brassica rapa Bra037579 I 0.866
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.866
MDP0000224810 Malus domestica MDP0000224810 N 0.865
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.864
Bostr.19424s0807 Boechera stricta Bostr.19424s0807 I 0.863
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.862
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.861
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.860
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.860
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.860
Bra001710 Brassica rapa Bra001710 I 0.859
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.859
Bo3g071560 Brassica oleracea Bo3g071560 I 0.857
Bra004212 Brassica rapa Bra004212 I 0.855
BRC1 Arabidopsis lyrata scaffold_302193.1 N 0.854
Cagra.1681s0023 Capsella grandiflora Cagra.1681s0023 I 0.853
Carubv10013748m.g Capsella rubella Carubv10013748m.g I 0.853
Cla018797 Citrullus lanatus Cla018797 N 0.848
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.845
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.842
30174.m008721 Ricinus communis 30174.m008721 I 0.842
Bo2g055640 Brassica oleracea Bo2g055640 I 0.842
Bo5g117410 Brassica oleracea Bo5g117410 N 0.841
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.840
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.840
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.836
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.836
Bra034010 Brassica rapa Bra034010 I 0.836
MDP0000219838 Malus domestica MDP0000219838 N 0.835
Bo6g099040 Brassica oleracea Bo6g099040 I 0.833
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.831
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.831
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.831
Pm030202 Prunus mume Pm030202 I 0.830
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.830
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.830
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.830
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.827
PK12240.1 Cannabis sativa PK12240.1 D 0.826
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.825
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.825
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.824
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.824
Cla016709 Citrullus lanatus Cla016709 I 0.824
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.824
TCP1 Arabidopsis thaliana AT1G67260 D 0.824
OS09G0410500 Oryza sativa OS09G0410500 I 0.824
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.824
OBART09G10040 Oryza barthii OBART09G10040 I 0.824
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.824
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.824
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.823
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.823