MTR_7g028160 (Medicago truncatula)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 MTR_7g028160 T344049_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC

GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.973 0.723
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC

GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.973 0.670
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN

NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.969 0.616
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC

GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.969 0.616
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH

DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.969 0.616
TCP20
M11397_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.969 0.616
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.969 0.598
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH

DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.966 0.616
PCF2
M11399_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.962 0.571
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC

GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.961 0.598
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH

DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.961 0.598
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW

WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.961 0.598
TCP15
M11394_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.961 0.598
VIT_15s0048g01150
M02515_2.00
Vitis vinifera
NNGGNCCCAC

GTGGGNCCNN
PBM
Weirauch et al.(2014)
pTH9294
0.959 0.545
PK14653.1
M01317_2.00
Cannabis sativa
BGGSCCCAC

GTGGGSCCV
PBM
Lambert et al.(2019)
pTH11324
0.957 0.545
PK14653.1
M02517_2.00
Cannabis sativa
BTGGGCCCAV

BTGGGCCCAV
PBM
Weirauch et al.(2014)
pTH9586
0.957 0.545
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN

NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.956 0.580
TCP9
M01086_2.00
Arabidopsis thaliana
NNGGGCCCACN

NGTGGGCCCNN
PBM
Sullivan et al.(2014)
pTH9796
0.956 0.527
TCP9
M07281_2.00
Arabidopsis thaliana
RTGGGDCCCAC

GTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a
0.956 0.527
TCP9
M07282_2.00
Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN

NVNHNHNHHGTGGGYCCCACH
Dap-seq
OMalley et al.(2016)
At2g45680_col_b
0.956 0.527
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC

GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.956 0.536
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC

GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.956 0.589
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC

GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.949 0.518
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC

GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.947 0.571
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9232
0.946 0.518
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN

NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.945 0.536
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN

NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.945 0.536
TCP23
M00891_2.00
Arabidopsis thaliana
NNGGKCCCAC

GTGGGMCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP23
0.939 0.527
TCP7
M07294_2.00
Arabidopsis thaliana
RTGGGNCCCAC

GTGGGNCCCAY
Dap-seq
OMalley et al.(2016)
TCP7_col_a
0.937 0.518
TCP21
M07292_2.00
Arabidopsis thaliana
NNRTGGGDCCCACN

NGTGGGHCCCAYNN
Dap-seq
OMalley et al.(2016)
At5g08330_col_a
0.933 0.491
TCP21
M07293_2.00
Arabidopsis thaliana
RTRGGDCCCACH

DGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a
0.933 0.491
OsI_08196
M02513_2.00
Oryza sativa
GGGCCCAC

GTGGGCCC
PBM
Weirauch et al.(2014)
pTH9274
0.931 0.500
OS02G0635800
M02512_2.00
Oryza sativa
NBGGGCCCVN

NBGGGCCCVN
PBM
Weirauch et al.(2014)
pTH8856
0.931 0.509
TCP11
M11395_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_01
0.890 0.473
TCP11
M11396_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_02
0.890 0.473
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES78357 TCP 48 167

Links

Other TCP family TFs
Other Medicago truncatula TFs

654 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30076.m004471 Ricinus communis 30076.m004471 I 0.000
AC216872.3_FG002 Zea mays AC216872.3_FG002 N 0.000
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.000
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.000
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.000
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.000
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.000
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.000
Bo4g197410 Brassica oleracea Bo4g197410 I 0.000
Bra040478 Brassica rapa Bra040478 I 0.000
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.000
Cagra.11546s0001 Capsella grandiflora Cagra.11546s0001 I 0.000
Carubv10010429m.g Capsella rubella Carubv10010429m.g I 0.000
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.000
Ca_01368 Cicer arietinum Ca_01368 I 0.000
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.000
Cla006845 Citrullus lanatus Cla006845 I 0.000
Cla017937 Citrullus lanatus Cla017937 I 0.000
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.000
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.000
Eucgr.B03050 Eucalyptus grandis Eucgr.B03050 I 0.000
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.000
Eucgr.G02345 Eucalyptus grandis Eucgr.G02345 I 0.000
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.000
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.000
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.000
F775_20738 Aegilops tauschii F775_20738 I 0.000
F775_21292 Aegilops tauschii F775_21292 I 0.000
F775_21293 Aegilops tauschii F775_21293 I 0.000
F775_22332 Aegilops tauschii F775_22332 I 0.000
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.000
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.000
GLYMA03G35700 Glycine max GLYMA03G35700 N 0.000
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.000
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.000
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.000
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.000
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.000
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.000
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.000
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.000
GRMZM2G018336 Zea mays GRMZM2G018336 I 0.000
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.000
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.000
GRMZM2G065538 Zea mays GRMZM2G065538 I 0.000
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.000
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.000
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.000
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.000
LjSGA_031920.1 Lotus japonicus LjSGA_031920.1 I 0.000
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.000
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.000
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.000
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.000
mgf023686m Mimulus guttatus mgf023686m I 0.000
MLOC_38822 Hordeum vulgare MLOC_38822 I 0.000
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.000
MLOC_48938 Hordeum vulgare MLOC_48938 N 0.000
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.000
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.000
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.000
OB01G12610 Oryza brachyantha OB01G12610 I 0.000
OB01G36520 Oryza brachyantha OB01G36520 I 0.000
OB02G35380 Oryza brachyantha OB02G35380 I 0.000
OB05G32250 Oryza brachyantha OB05G32250 I 0.000
OB10G24100 Oryza brachyantha OB10G24100 N 0.000
OBART01G02620 Oryza barthii OBART01G02620 I 0.000
OBART02G28100 Oryza barthii OBART02G28100 N 0.000
OBART04G22880 Oryza barthii OBART04G22880 I 0.000
OGLUM01G02860 Oryza glumaepatula OGLUM01G02860 I 0.000
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.000
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.000
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.000
OLONG_010584 Oryza longistaminata OLONG_010584 I 0.000
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.000
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.000
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.000
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.000
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.000
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.000
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.000
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.000
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.000
ORUFI05G26590 Oryza rufipogon ORUFI05G26590 N 0.000
OS02G0683500 Oryza sativa OS02G0683500 N 0.000
OS04G0581400 Oryza sativa OS04G0581400 I 0.000
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.000
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.000
Pavir.Ea00485 Panicum virgatum Pavir.Ea00485 I 0.000
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.000
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.000
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.000
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.000
PK11025.1 Cannabis sativa PK11025.1 I 0.000
Pm024248 Prunus mume Pm024248 I 0.000
Pm028725 Prunus mume Pm028725 N 0.000
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.000
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.000
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.000
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.000
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.000
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.000
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.000
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.000
Si011823m.g Setaria italica Si011823m.g N 0.000
Si020241m.g Setaria italica Si020241m.g N 0.000
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.000
TCM_005014 Theobroma cacao TCM_005014 I 0.000
TCM_015590 Theobroma cacao TCM_015590 I 0.000
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.000
Traes_1BL_B8B4C1FB6 Triticum aestivum Traes_1BL_B8B4C1FB6 I 0.000
Traes_1BL_F14523046 Triticum aestivum Traes_1BL_F14523046 I 0.000
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.000
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.000
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.000
Traes_3AS_2E5380A2A Triticum aestivum Traes_3AS_2E5380A2A I 0.000
Traes_3AS_82DEC629B Triticum aestivum Traes_3AS_82DEC629B N 0.000
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.000
Traes_4DL_59B1C9052 Triticum aestivum Traes_4DL_59B1C9052 I 0.000
Traes_4DL_872A1302F Triticum aestivum Traes_4DL_872A1302F I 0.000
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.000
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.000
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.000
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.000
TRIUR3_10777 Triticum urartu TRIUR3_10777 N 0.000
TRIUR3_10778 Triticum urartu TRIUR3_10778 N 0.000
TRIUR3_24850 Triticum urartu TRIUR3_24850 I 0.000
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.000
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.000
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.000