CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
OLONG_002160
(
Oryza longistaminata
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
OLONG_002160
T344107_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OsI_08196
M02513_2.00
Oryza sativa
GGGCCCAC
GTGGGCCC
PBM
Weirauch et al.(2014)
pTH9274
0.882
0.495
OS02G0635800
M02512_2.00
Oryza sativa
NBGGGCCCVN
NBGGGCCCVN
PBM
Weirauch et al.(2014)
pTH8856
0.881
0.505
TCP7
M07294_2.00
Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY
Dap-seq
OMalley et al.(2016)
TCP7_col_a
0.874
0.547
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.862
0.442
TCP21
M07292_2.00
Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN
Dap-seq
OMalley et al.(2016)
At5g08330_col_a
0.859
0.484
TCP21
M07293_2.00
Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a
0.859
0.484
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.854
0.442
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.854
0.421
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.854
0.421
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.854
0.421
TCP15
M11394_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.854
0.421
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.854
0.411
TCP23
M00891_2.00
Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP23
0.849
0.411
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.846
0.453
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.846
0.453
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH
DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.832
0.411
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.830
0.432
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.826
0.347
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC
GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.825
0.389
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC
GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.824
0.368
PCF2
M11399_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.824
0.337
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.823
0.389
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.823
0.389
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.823
0.389
TCP20
M11397_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.823
0.389
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OLONG_002160-R1
TCP
29
125
QITMPFTAAPVDALTRELGLKSDGQTVEWLLRQAEPSILAATGSGTTPAVFSCSSAPSTASSSSFLLGKRQRQEDHEAPSFWEALQQQQPRPAVSSW
Links
Other
TCP
family TFs
Other
Oryza longistaminata
TFs
440 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy