ORGLA07G0028600 (Oryza glaberrima)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 ORGLA07G0028600 T344191_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP24
M02499_2.00
Arabidopsis thaliana
NNNNRVMCVV

BBGKBYNNNN
PBM
Weirauch et al.(2014)
pTH7337
0.952 0.289
TCP24
M07272_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP24_colamp_a
0.952 0.289
TCP24
M07273_2.00
Arabidopsis thaliana
NNBGGGACCACH

DGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
TCP24_col
0.952 0.289
TCP24
M02506_2.00
Arabidopsis lyrata
NBKKNNMMVN

NBKKNNMMVN
PBM
Weirauch et al.(2014)
pTH9227
0.952 0.284
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA07G0028600.1 TCP 59 199
ORGLA07G0028600.1 TCP 317 411

Links

Other TCP family TFs
Other Oryza glaberrima TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA025162 Oryza indica BGIOSGA025162 I 0.983
Bo5g062580 Brassica oleracea Bo5g062580 I 0.953
Bo6g107240 Brassica oleracea Bo6g107240 I 0.903
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I 0.953
Bra032365 Brassica rapa Bra032365 I 0.954
BRC1 Vitis vinifera VIT_17s0000g04180 I 0.913
chr3.CM0282.560.nc Lotus japonicus chr3.CM0282.560.nc I 0.947
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I 0.895
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I 0.895
Cla020670 Citrullus lanatus Cla020670 I 0.897
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I 0.894
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I 0.897
Lus10017856.g Linum usitatissimum Lus10017856.g I 0.924
Lus10038512.g Linum usitatissimum Lus10038512.g I 0.947
Lus10042962.g Linum usitatissimum Lus10042962.g I 0.876
mgf014960m Mimulus guttatus mgf014960m I 0.917
mgf025386m Mimulus guttatus mgf025386m I 0.914
MTR_7g015010 Medicago truncatula MTR_7g015010 I 0.897
OBART07G03380 Oryza barthii OBART07G03380 I 0.976
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I 0.900
OGLUM07G02670 Oryza glumaepatula OGLUM07G02670 I 0.983
ONIVA07G01330 Oryza nivara ONIVA07G01330 I 0.983
orange1.1g047495m.g Citrus sinensis orange1.1g047495m.g I 0.895
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I 0.921
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I 0.977
OS07G0152000 Oryza sativa OS07G0152000 I 0.983
PGSC0003DMG400010045 Solanum tuberosum PGSC0003DMG400010045 I 0.902
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I 0.895
TCP24 Arabidopsis lyrata fgenesh2_kg.1__3195__AT1G30210.2 D 0.952
TCP24 Arabidopsis thaliana AT1G30210 D 0.952
Thhalv10008175m.g Eutrema salsugineum Thhalv10008175m.g I 0.941
Thhalv10018773m.g Eutrema salsugineum Thhalv10018773m.g I 0.904