ORUFI12G00880 (Oryza rufipogon)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 ORUFI12G00880 T344221_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.884 0.409
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.859 0.386
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.857 0.370
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.840 0.331
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.840 0.323
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.836 0.315
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.826 0.315
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI12G00880.1 TCP 15 141

Links

Other TCP family TFs
Other Oryza rufipogon TFs

218 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OGLUM12G00790 Oryza glumaepatula OGLUM12G00790 I 0.969
BGIOSGA034630 Oryza indica BGIOSGA034630 I 0.968
ONIVA11G00470 Oryza nivara ONIVA11G00470 I 0.968
OBART12G00580 Oryza barthii OBART12G00580 I 0.955
PCF8 Oryza indica BGIOSGA037799 I 0.943
OGLUM12G20570 Oryza glumaepatula OGLUM12G20570 I 0.943
ONIVA12G17870 Oryza nivara ONIVA12G17870 I 0.943
ORGLA12G0161900 Oryza glaberrima ORGLA12G0161900 I 0.943
OMERI12G13760 Oryza meridionalis OMERI12G13760 I 0.939
OPUNC12G17090 Oryza punctata OPUNC12G17090 I 0.938
Sb08g021690 Sorghum bicolor Sb08g021690 I 0.929
GRMZM2G180568 Zea mays GRMZM2G180568 I 0.928
BRADI4G01547 Brachypodium distachyon BRADI4G01547 I 0.926
Pavir.J37910 Panicum virgatum Pavir.J37910 I 0.925
LPERR12G15920 Leersia perrieri LPERR12G15920 I 0.925
Si022811m.g Setaria italica Si022811m.g I 0.925
Traes_5DS_643EDFE5B Triticum aestivum Traes_5DS_643EDFE5B I 0.924
MLOC_72581 Hordeum vulgare MLOC_72581 I 0.923
Traes_5BS_77558D2A3 Triticum aestivum Traes_5BS_77558D2A3 I 0.922
Pavir.Ca02949 Panicum virgatum Pavir.Ca02949 I 0.921
Pavir.Cb00038 Panicum virgatum Pavir.Cb00038 I 0.917
OMERI02G31110 Oryza meridionalis OMERI02G31110 I 0.916
Traes_2AL_EA60A06AC Triticum aestivum Traes_2AL_EA60A06AC I 0.893
GRMZM2G020805 Zea mays GRMZM2G020805 I 0.892
Pavir.Ba03864 Panicum virgatum Pavir.Ba03864 I 0.891
GSMUA_Achr4G31520_001 Musa acuminata GSMUA_Achr4G31520_001 I 0.890
ORUFI12G21090 Oryza rufipogon ORUFI12G21090 I 0.890
LPERR03G30870 Leersia perrieri LPERR03G30870 I 0.889
Ciclev10014986m.g Citrus clementina Ciclev10014986m.g I 0.889
orange1.1g009938m.g Citrus sinensis orange1.1g009938m.g I 0.889
GSMUA_Achr2G12990_001 Musa acuminata GSMUA_Achr2G12990_001 I 0.889
Gorai.011G046000 Gossypium raimondii Gorai.011G046000 I 0.889
MLOC_63989 Hordeum vulgare MLOC_63989 I 0.888
TCP2 Vitis vinifera VIT_10s0003g03910 I 0.888
PRUPE_ppa004612mg Prunus persica PRUPE_ppa004612mg I 0.888
ORUFI07G02160 Oryza rufipogon ORUFI07G02160 N 0.887
Aquca_057_00119 Aquilegia coerulea Aquca_057_00119 I 0.887
BRADI1G58450 Brachypodium distachyon BRADI1G58450 I 0.887
Traes_2BL_36A3AB3A2 Triticum aestivum Traes_2BL_36A3AB3A2 I 0.886
SapurV1A.0971s0180 Salix purpurea SapurV1A.0971s0180 I 0.885
SapurV1A.1394s0060 Salix purpurea SapurV1A.1394s0060 I 0.885
Pavir.J36433 Panicum virgatum Pavir.J36433 I 0.884
LjT20A21.20.nc Lotus japonicus LjT20A21.20.nc D 0.884
Sb02g003070 Sorghum bicolor Sb02g003070 I 0.884
Traes_5BL_2DDBAA0C2 Triticum aestivum Traes_5BL_2DDBAA0C2 I 0.883
Gorai.009G153900 Gossypium raimondii Gorai.009G153900 I 0.883
MLOC_10214 Hordeum vulgare MLOC_10214 I 0.883
GSMUA_Achr7G01160_001 Musa acuminata GSMUA_Achr7G01160_001 I 0.883
GSMUA_Achr5G02530_001 Musa acuminata GSMUA_Achr5G02530_001 I 0.882
ONIVA03G37780 Oryza nivara ONIVA03G37780 I 0.881
PCF6 Oryza indica BGIOSGA013684 I 0.881
OGLUM03G36280 Oryza glumaepatula OGLUM03G36280 I 0.881
29693.m001968 Ricinus communis 29693.m001968 I 0.881
Pm010440 Prunus mume Pm010440 I 0.881
LPERR07G02820 Leersia perrieri LPERR07G02820 I 0.881
cassava7638.valid.m1 Manihot esculenta cassava7638.valid.m1 I 0.881
cassava2420.valid.m1 Manihot esculenta cassava2420.valid.m1 I 0.881
PK16724.1 Cannabis sativa PK16724.1 I 0.879
Solyc08g048390.1 Solanum lycopersicum Solyc08g048390.1 I 0.878
POPTR_0011s02350 Populus trichocarpa POPTR_0011s02350 I 0.878
PCF6 Oryza sativa OS03G0785800 I 0.878
SapurV1A.0232s0150 Salix purpurea SapurV1A.0232s0150 I 0.878
GSMUA_Achr4G22960_001 Musa acuminata GSMUA_Achr4G22960_001 I 0.878
OMERI03G33790 Oryza meridionalis OMERI03G33790 I 0.878
ORUFI03G38070 Oryza rufipogon ORUFI03G38070 I 0.878
Lus10023297.g Linum usitatissimum Lus10023297.g I 0.878
TCM_029442 Theobroma cacao TCM_029442 I 0.877
OMERI07G02020 Oryza meridionalis OMERI07G02020 I 0.877
GLYMA13G29160 Glycine max GLYMA13G29160 I 0.877
Si036075m.g Setaria italica Si036075m.g I 0.876
GRMZM2G089361 Zea mays GRMZM2G089361 I 0.876
MDP0000287069 Malus domestica MDP0000287069 I 0.875
GLYMA08G10350 Glycine max GLYMA08G10350 I 0.875
Si019114m.g Setaria italica Si019114m.g I 0.875
POPTR_0004s06440 Populus trichocarpa POPTR_0004s06440 I 0.874
Ca_00482 Cicer arietinum Ca_00482 I 0.874
Cucsa.047860 Cucumis sativus Cucsa.047860 I 0.874
GLYMA05G27367 Glycine max GLYMA05G27367 I 0.872
GLYMA15G09910 Glycine max GLYMA15G09910 I 0.872
ORGLA03G0335700 Oryza glaberrima ORGLA03G0335700 I 0.872
OBART02G32460 Oryza barthii OBART02G32460 I 0.869
MDP0000927314 Malus domestica MDP0000927314 I 0.867
OPUNC07G03260 Oryza punctata OPUNC07G03260 I 0.865
evm.TU.supercontig_17.1 Carica papaya evm.TU.supercontig_17.1 I 0.865
Ca_05033 Cicer arietinum Ca_05033 I 0.865
Cucsa.111880 Cucumis sativus Cucsa.111880 I 0.864
Bostr.30275s0311 Boechera stricta Bostr.30275s0311 I 0.864
Bra012600 Brassica rapa Bra012600 I 0.864
Cla019865 Citrullus lanatus Cla019865 I 0.864
Bo7g105960 Brassica oleracea Bo7g105960 I 0.864
AMTR_s00092p00113360 Amborella trichopoda AMTR_s00092p00113360 I 0.863
Sb01g006020 Sorghum bicolor Sb01g006020 I 0.863
OMERI04G02350 Oryza meridionalis OMERI04G02350 N 0.862
PGSC0003DMG400019904 Solanum tuberosum PGSC0003DMG400019904 I 0.862
Solyc08g048370.2 Solanum lycopersicum Solyc08g048370.2 I 0.862
Bo1g019520 Brassica oleracea Bo1g019520 I 0.861
GRMZM2G115516 Zea mays GRMZM2G115516 I 0.860
TCP2 Arabidopsis lyrata fgenesh2_kg.7__2455__AT4G18390.1 D 0.859
MTR_4g109660 Medicago truncatula MTR_4g109660 I 0.858
mgf024988m Mimulus guttatus mgf024988m I 0.857
Thhalv10025465m.g Eutrema salsugineum Thhalv10025465m.g I 0.857
TCP2 Arabidopsis thaliana AT4G18390 D 0.857
Pavir.Ia00505 Panicum virgatum Pavir.Ia00505 I 0.855
Bra010789 Brassica rapa Bra010789 I 0.854
gene30370-v1.0-hybrid Fragaria vesca gene30370-v1.0-hybrid I 0.854
Bo3g147760 Brassica oleracea Bo3g147760 I 0.851
gene04255-v1.0-hybrid Fragaria vesca gene04255-v1.0-hybrid I 0.851
Cagra.3678s0010 Capsella grandiflora Cagra.3678s0010 I 0.851
Carubv10011113m.g Capsella rubella Carubv10011113m.g I 0.848
mgf016959m Mimulus guttatus mgf016959m I 0.848
Si029871m.g Setaria italica Si029871m.g I 0.847
PGSC0003DMG400022964 Solanum tuberosum PGSC0003DMG400022964 I 0.847
OMERI01G07200 Oryza meridionalis OMERI01G07200 I 0.846
SELMODRAFT_7330 Selaginella moellendorffii SELMODRAFT_7330 I 0.846
PK17676.1 Cannabis sativa PK17676.1 I 0.846
Ca_13216 Cicer arietinum Ca_13216 I 0.846
GSMUA_Achr4G32850_001 Musa acuminata GSMUA_Achr4G32850_001 I 0.845
Si004564m.g Setaria italica Si004564m.g I 0.845
PDK_20s1781021g001 Phoenix dactylifera PDK_20s1781021g001 I 0.842
SELMODRAFT_29162 Selaginella moellendorffii SELMODRAFT_29162 I 0.842
SELMODRAFT_29160 Selaginella moellendorffii SELMODRAFT_29160 I 0.842
GSMUA_Achr7G13980_001 Musa acuminata GSMUA_Achr7G13980_001 I 0.841
Thhalv10014467m.g Eutrema salsugineum Thhalv10014467m.g I 0.841
OS01G0213800 Oryza sativa OS01G0213800 D 0.840
OPUNC01G06940 Oryza punctata OPUNC01G06940 I 0.840
ONIVA01G09270 Oryza nivara ONIVA01G09270 I 0.840
PCF5 Oryza indica BGIOSGA002128 I 0.840
OBART01G07230 Oryza barthii OBART01G07230 I 0.840
TCP5 Arabidopsis lyrata fgenesh2_kg.8__2066__AT5G60970.1 D 0.840
ORGLA01G0062300 Oryza glaberrima ORGLA01G0062300 I 0.840
ORUFI01G07780 Oryza rufipogon ORUFI01G07780 I 0.840
OGLUM01G08160 Oryza glumaepatula OGLUM01G08160 I 0.840
Carubv10005003m.g Capsella rubella Carubv10005003m.g I 0.839
mgf007729m Mimulus guttatus mgf007729m I 0.839
Cagra.2935s0020 Capsella grandiflora Cagra.2935s0020 I 0.839
Bostr.1460s0130 Boechera stricta Bostr.1460s0130 I 0.839
BRADI2G06890 Brachypodium distachyon BRADI2G06890 I 0.838
30138.m003959 Ricinus communis 30138.m003959 I 0.838
GRMZM2G148022 Zea mays GRMZM2G148022 I 0.838
evm.TU.supercontig_94.62 Carica papaya evm.TU.supercontig_94.62 I 0.838
OLONG_003082 Oryza longistaminata OLONG_003082 I 0.838
Thhalv10021021m.g Eutrema salsugineum Thhalv10021021m.g I 0.837
TRAES3BF014900010CFD_g Triticum aestivum TRAES3BF014900010CFD_g I 0.836
Carubv10026656m.g Capsella rubella Carubv10026656m.g I 0.836
Cagra.0083s0006 Capsella grandiflora Cagra.0083s0006 I 0.836
Pavir.J03475 Panicum virgatum Pavir.J03475 I 0.836
MLOC_68285 Hordeum vulgare MLOC_68285 I 0.836
Solyc02g089020.1 Solanum lycopersicum Solyc02g089020.1 I 0.836
TCP5 Arabidopsis thaliana AT5G60970 D 0.836
AC205574.3_FG006 Zea mays AC205574.3_FG006 I 0.835
Solyc10g018710.1 Solanum lycopersicum Solyc10g018710.1 I 0.834
MTR_2g090960 Medicago truncatula MTR_2g090960 I 0.834
Lus10034679.g Linum usitatissimum Lus10034679.g I 0.834
Bo2g161240 Brassica oleracea Bo2g161240 I 0.834
Bra029344 Brassica rapa Bra029344 I 0.834
GLYMA13G34690 Glycine max GLYMA13G34690 I 0.834
Gorai.001G076700 Gossypium raimondii Gorai.001G076700 I 0.834
Sb03g001940 Sorghum bicolor Sb03g001940 I 0.834
Thhalv10004440m.g Eutrema salsugineum Thhalv10004440m.g I 0.833
GSMUA_Achr10G01020_001 Musa acuminata GSMUA_Achr10G01020_001 I 0.833
BRADI1G06460 Brachypodium distachyon BRADI1G06460 I 0.833
Bostr.26833s0140 Boechera stricta Bostr.26833s0140 I 0.833
Cla023702 Citrullus lanatus Cla023702 I 0.833
Cucsa.122730 Cucumis sativus Cucsa.122730 I 0.833
GLYMA08G27155 Glycine max GLYMA08G27155 I 0.832
OS01G0755500 Oryza sativa OS01G0755500 I 0.832
cassava19177.valid.m1 Manihot esculenta cassava19177.valid.m1 I 0.832
GLYMA18G50371 Glycine max GLYMA18G50371 I 0.832
Gorai.009G373000 Gossypium raimondii Gorai.009G373000 I 0.831
Solyc05g012840.1 Solanum lycopersicum Solyc05g012840.1 I 0.831
Ca_16227 Cicer arietinum Ca_16227 I 0.830
fgenesh1_pg.scaffold_332000019 Physcomitrella patens fgenesh1_pg.scaffold_332000019 I 0.830
gene17805-v1.0-hybrid Fragaria vesca gene17805-v1.0-hybrid I 0.829
SELMODRAFT_89227 Selaginella moellendorffii SELMODRAFT_89227 I 0.829
Solyc02g077250.2 Solanum lycopersicum Solyc02g077250.2 I 0.829
SELMODRAFT_104521 Selaginella moellendorffii SELMODRAFT_104521 I 0.829
Cagra.3823s0015 Capsella grandiflora Cagra.3823s0015 I 0.829
Ca_02473 Cicer arietinum Ca_02473 I 0.828
MDP0000155433 Malus domestica MDP0000155433 I 0.828
Eucgr.K01089 Eucalyptus grandis Eucgr.K01089 I 0.828
evm.TU.supercontig_131.71 Carica papaya evm.TU.supercontig_131.71 I 0.828
Ciclev10015871m.g Citrus clementina Ciclev10015871m.g I 0.828
GLYMA06G43721 Glycine max GLYMA06G43721 I 0.828
orange1.1g019898m.g Citrus sinensis orange1.1g019898m.g I 0.828
Carubv10014042m.g Capsella rubella Carubv10014042m.g I 0.828
mgf021685m Mimulus guttatus mgf021685m I 0.827
Bra027284 Brassica rapa Bra027284 I 0.827
Sb03g035350 Sorghum bicolor Sb03g035350 I 0.827
GLYMA12G35720 Glycine max GLYMA12G35720 I 0.827
POPTR_0015s06980 Populus trichocarpa POPTR_0015s06980 I 0.827
MTR_3g026050 Medicago truncatula MTR_3g026050 I 0.826
GLYMA04G32324 Glycine max GLYMA04G32324 I 0.826
PK10344.1 Cannabis sativa PK10344.1 D 0.826
PGSC0003DMG400001362 Solanum tuberosum PGSC0003DMG400001362 I 0.826
Sb03g034918 Sorghum bicolor Sb03g034918 I 0.826
LPERR01G06830 Leersia perrieri LPERR01G06830 I 0.826
Pavir.J24681 Panicum virgatum Pavir.J24681 I 0.825
TCM_018809 Theobroma cacao TCM_018809 I 0.825
Bo5g127500 Brassica oleracea Bo5g127500 I 0.825
Pm024946 Prunus mume Pm024946 I 0.825
MTR_4g079580 Medicago truncatula MTR_4g079580 I 0.825
MDP0000442611 Malus domestica MDP0000442611 I 0.825
VIT_10s0003g00870 Vitis vinifera VIT_10s0003g00870 I 0.825
PRUPE_ppa014630mg Prunus persica PRUPE_ppa014630mg I 0.824
ORUFI01G34460 Oryza rufipogon ORUFI01G34460 I 0.824
OPUNC01G30360 Oryza punctata OPUNC01G30360 I 0.824
OGLUM01G35450 Oryza glumaepatula OGLUM01G35450 I 0.824
ONIVA01G35730 Oryza nivara ONIVA01G35730 I 0.824
Bra039158 Brassica rapa Bra039158 I 0.824
Bra012990 Brassica rapa Bra012990 I 0.824
Bo7g098260 Brassica oleracea Bo7g098260 I 0.824
Bo5g152840 Brassica oleracea Bo5g152840 I 0.824
SapurV1A.0083s0520 Salix purpurea SapurV1A.0083s0520 I 0.824
GSMUA_Achr3G31370_001 Musa acuminata GSMUA_Achr3G31370_001 I 0.824
Pavir.J07136 Panicum virgatum Pavir.J07136 I 0.823
SELMODRAFT_28794 Selaginella moellendorffii SELMODRAFT_28794 I 0.823
OPUNC05G20130 Oryza punctata OPUNC05G20130 I 0.822
Pm029788 Prunus mume Pm029788 I 0.822