PGSC0003DMG400010045 (Solanum tuberosum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 PGSC0003DMG400010045 T344259_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP24
M02499_2.00
Arabidopsis thaliana
NNNNRVMCVV

BBGKBYNNNN
PBM
Weirauch et al.(2014)
pTH7337
0.932 0.383
TCP24
M07272_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP24_colamp_a
0.932 0.383
TCP24
M07273_2.00
Arabidopsis thaliana
NNBGGGACCACH

DGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
TCP24_col
0.932 0.383
TCP24
M02506_2.00
Arabidopsis lyrata
NBKKNNMMVN

NBKKNNMMVN
PBM
Weirauch et al.(2014)
pTH9227
0.931 0.383
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400026037 TCP 61 150
PGSC0003DMT400026037 TCP 151 188

Links

Other TCP family TFs
Other Solanum tuberosum TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I 0.976
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I 0.955
orange1.1g047495m.g Citrus sinensis orange1.1g047495m.g I 0.955
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I 0.954
mgf025386m Mimulus guttatus mgf025386m I 0.953
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I 0.951
BRC1 Vitis vinifera VIT_17s0000g04180 I 0.949
Thhalv10018773m.g Eutrema salsugineum Thhalv10018773m.g I 0.948
Cla020670 Citrullus lanatus Cla020670 I 0.945
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I 0.945
Bo6g107240 Brassica oleracea Bo6g107240 I 0.937
Bra032365 Brassica rapa Bra032365 I 0.933
TCP24 Arabidopsis thaliana AT1G30210 D 0.932
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I 0.932
TCP24 Arabidopsis lyrata fgenesh2_kg.1__3195__AT1G30210.2 D 0.931
Bo5g062580 Brassica oleracea Bo5g062580 I 0.931
Lus10042962.g Linum usitatissimum Lus10042962.g I 0.927
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I 0.923
OBART07G03380 Oryza barthii OBART07G03380 I 0.923
Thhalv10008175m.g Eutrema salsugineum Thhalv10008175m.g I 0.918
Lus10038512.g Linum usitatissimum Lus10038512.g I 0.913
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I 0.908
chr3.CM0282.560.nc Lotus japonicus chr3.CM0282.560.nc I 0.906
ONIVA07G01330 Oryza nivara ONIVA07G01330 I 0.902
OGLUM07G02670 Oryza glumaepatula OGLUM07G02670 I 0.902
BGIOSGA025162 Oryza indica BGIOSGA025162 I 0.902
ORGLA07G0028600 Oryza glaberrima ORGLA07G0028600 I 0.902
OS07G0152000 Oryza sativa OS07G0152000 I 0.902
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I 0.898
Lus10017856.g Linum usitatissimum Lus10017856.g I 0.873
mgf014960m Mimulus guttatus mgf014960m I 0.839
MTR_7g015010 Medicago truncatula MTR_7g015010 I 0.828