PGSC0003DMG400016363 (Solanum tuberosum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 PGSC0003DMG400016363 T344262_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP7
M07294_2.00
Arabidopsis thaliana
RTGGGNCCCAC

GTGGGNCCCAY
Dap-seq
OMalley et al.(2016)
TCP7_col_a
0.970 0.867
TCP21
M07292_2.00
Arabidopsis thaliana
NNRTGGGDCCCACN

NGTGGGHCCCAYNN
Dap-seq
OMalley et al.(2016)
At5g08330_col_a
0.965 0.807
TCP21
M07293_2.00
Arabidopsis thaliana
RTRGGDCCCACH

DGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a
0.965 0.807
TCP23
M00891_2.00
Arabidopsis thaliana
NNGGKCCCAC

GTGGGMCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP23
0.960 0.704
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN

NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.960 0.694
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN

NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.960 0.694
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC

GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.957 0.663
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN

NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.953 0.653
PCF2
M11399_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.957 0.675
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC

GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.952 0.653
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN

NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.952 0.687
OsI_08196
M02513_2.00
Oryza sativa
GGGCCCAC

GTGGGCCC
PBM
Weirauch et al.(2014)
pTH9274
0.952 0.612
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC

GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.952 0.687
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH

DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.952 0.687
OS02G0635800
M02512_2.00
Oryza sativa
NBGGGCCCVN

NBGGGCCCVN
PBM
Weirauch et al.(2014)
pTH8856
0.951 0.622
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC

GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.951 0.673
TCP20
M11397_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.952 0.687
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC

GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.951 0.673
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH

DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.951 0.673
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW

WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.951 0.673
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC

GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.951 0.663
TCP15
M11394_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.951 0.673
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9232
0.946 0.571
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.949 0.663
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH

DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.944 0.633
PK14653.1
M01317_2.00
Cannabis sativa
BGGSCCCAC

GTGGGSCCV
PBM
Lambert et al.(2019)
pTH11324
0.939 0.571
PK14653.1
M02517_2.00
Cannabis sativa
BTGGGCCCAV

BTGGGCCCAV
PBM
Weirauch et al.(2014)
pTH9586
0.939 0.571
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC

GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.938 0.622
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC

GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.934 0.571
VIT_15s0048g01150
M02515_2.00
Vitis vinifera
NNGGNCCCAC

GTGGGNCCNN
PBM
Weirauch et al.(2014)
pTH9294
0.934 0.651
TCP9
M01086_2.00
Arabidopsis thaliana
NNGGGCCCACN

NGTGGGCCCNN
PBM
Sullivan et al.(2014)
pTH9796
0.930 0.639
TCP9
M07281_2.00
Arabidopsis thaliana
RTGGGDCCCAC

GTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a
0.930 0.639
TCP9
M07282_2.00
Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN

NVNHNHNHHGTGGGYCCCACH
Dap-seq
OMalley et al.(2016)
At2g45680_col_b
0.930 0.639
TCP11
M11395_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_01
0.856 0.578
TCP11
M11396_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_02
0.856 0.578
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400042166 TCP 35 165
PGSC0003DMT400042167 TCP 35 208
PGSC0003DMT400042168 TCP 35 208

Links

Other TCP family TFs
Other Solanum tuberosum TFs

Invalid Input OrderBy

662 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action