POPTR_0015s13660 (Populus trichocarpa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 POPTR_0015s13660 T344305_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
VIT_15s0048g01150
M02515_2.00
Vitis vinifera
NNGGNCCCAC

GTGGGNCCNN
PBM
Weirauch et al.(2014)
pTH9294
0.972 0.683
TCP9
M01086_2.00
Arabidopsis thaliana
NNGGGCCCACN

NGTGGGCCCNN
PBM
Sullivan et al.(2014)
pTH9796
0.967 0.691
TCP9
M07281_2.00
Arabidopsis thaliana
RTGGGDCCCAC

GTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a
0.967 0.691
TCP9
M07282_2.00
Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN

NVNHNHNHHGTGGGYCCCACH
Dap-seq
OMalley et al.(2016)
At2g45680_col_b
0.967 0.691
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC

GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.966 0.602
PK14653.1
M01317_2.00
Cannabis sativa
BGGSCCCAC

GTGGGSCCV
PBM
Lambert et al.(2019)
pTH11324
0.965 0.602
PK14653.1
M02517_2.00
Cannabis sativa
BTGGGCCCAV

BTGGGCCCAV
PBM
Weirauch et al.(2014)
pTH9586
0.965 0.602
PCF2
M11399_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.962 0.545
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC

GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.962 0.594
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9232
0.962 0.594
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC

GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.957 0.504
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC

GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.956 0.488
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC

GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.956 0.496
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH

DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.956 0.496
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW

WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.956 0.496
TCP15
M11394_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.956 0.496
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC

GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.956 0.480
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN

NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.955 0.488
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN

NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.951 0.447
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.951 0.447
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC

GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.951 0.447
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH

DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.951 0.447
TCP20
M11397_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.951 0.447
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN

NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.947 0.488
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN

NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.947 0.488
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC

GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.947 0.472
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH

DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.946 0.455
TCP23
M00891_2.00
Arabidopsis thaliana
NNGGKCCCAC

GTGGGMCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP23
0.945 0.504
TCP7
M07294_2.00
Arabidopsis thaliana
RTGGGNCCCAC

GTGGGNCCCAY
Dap-seq
OMalley et al.(2016)
TCP7_col_a
0.931 0.431
TCP21
M07292_2.00
Arabidopsis thaliana
NNRTGGGDCCCACN

NGTGGGHCCCAYNN
Dap-seq
OMalley et al.(2016)
At5g08330_col_a
0.930 0.447
TCP21
M07293_2.00
Arabidopsis thaliana
RTRGGDCCCACH

DGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a
0.930 0.447
OsI_08196
M02513_2.00
Oryza sativa
GGGCCCAC

GTGGGCCC
PBM
Weirauch et al.(2014)
pTH9274
0.927 0.439
OS02G0635800
M02512_2.00
Oryza sativa
NBGGGCCCVN

NBGGGCCCVN
PBM
Weirauch et al.(2014)
pTH8856
0.927 0.431
TCP11
M11395_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_01
0.886 0.415
TCP11
M11396_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_02
0.886 0.415
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0015s13660.1 TCP 86 215

Links

Other TCP family TFs
Other Populus trichocarpa TFs

651 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g00656 Acanthocheilonema viteae nAv.1.0.1.g00656 N 0.000
Alligator_sinensis_CCG000427.1 Alligator sinensis Alligator_sinensis_CCG000427.1 N 0.000
ANCCAN_18993 Ancylostoma caninum ANCCAN_18993 N 0.000
ANCCEY_09797 Ancylostoma ceylanicum ANCCEY_09797 N 0.000
ACAC_0000967001 Angiostrongylus cantonensis ACAC_0000967001 N 0.000
ACOC_0001090601 Angiostrongylus costaricensis ACOC_0001090601 N 0.000
ASIM_0000354801 Anisakis simplex ASIM_0000354801 N 0.000
ACUA011690 Anopheles culicifacies ACUA011690 N 0.000
AGAP000061 Anopheles gambiae AGAP000061 I 0.000
AMAM006920 Anopheles maculatus AMAM006920 N 0.000
ACEP10767 Atta cephalotes ACEP10767 N 0.000
BGLB010771 Biomphalaria glabrata BGLB010771 N 0.000
BGIBMGA013353 Bombyx mori BGIBMGA013353 N 0.000
gw.66.200.1 Branchiostoma floridae gw.66.200.1 N 0.000
Bm2283 Brugia malayi Bm2283 N 0.000
BTMF_0000416401 Brugia timori BTMF_0000416401 N 0.000
BTMF_0001093101 Brugia timori BTMF_0001093101 N 0.000
Cflo_07825--XP_624996.2_APIME Camponotus floridanus Cflo_07825--XP_624996.2_APIME N 0.000
ONECUT3 Canis familiaris ENSCAFG00000019469 N 0.000
Cmyd_10014202 Chelonia mydas Cmyd_10014202 N 0.000
Cmyd_10006709 Chelonia mydas Cmyd_10006709 N 0.000
Cmyd_10009028 Chelonia mydas Cmyd_10009028 N 0.000
CLEC007920 Cimex lectularius CLEC007920 N 0.000
ENSDORG00000002300 Dipodomys ordii ENSDORG00000002300 N 0.000
GD24376 Drosophila simulans FBgn0195717 N 0.000
ECPE_0000369101 Echinostoma caproni ECPE_0000369101 N 0.000
EEL_0001075201 Elaeophora elaphi EEL_0001075201 N 0.000
EVEC_0000948201 Enterobius vermicularis EVEC_0000948201 N 0.000
D915_04001 Fasciola hepatica D915_04001 N 0.000
ENSGMOG00000012508 Gadus morhua ENSGMOG00000012508 N 0.000
GPUH_0000805401 Gongylonema pulchrum GPUH_0000805401 N 0.000
HPLM_0000364001 Haemonchus placei HPLM_0000364001 N 0.000
HHAL003723-PA Halyomorpha halys HHAL003723-PA N 0.000
ISCW015628 Ixodes scapularis ISCW015628 N 0.000
ENSLACG00000003028 Latimeria chalumnae ENSLACG00000003028 N 0.000
LDEC016076 Leptinotarsa decemlineata LDEC016076 N 0.000
LCUP017328 Lucilia cuprina LCUP017328 N 0.000
MCINX014974 Melitaea cinxia MCINX014974 N 0.000
MCOS_0000769501 Mesocestoides corti MCOS_0000769501 N 0.000
Myotis_brandtii_Onecut1_10025993 Myotis brandtii Myotis_brandtii_Onecut1_10025993 N 0.000
NECAME_16148 Necator americanus NECAME_16148 N 0.000
NBR_0001501501 Nippostrongylus brasiliensis NBR_0001501501 N 0.000
Ocbimv22034219m.g Octopus bimaculoides Ocbimv22034219m.g N 0.000
OESDEN_04593 Oesophagostomum dentatum OESDEN_04593 N 0.000
SNAPOd2T00024998001 Oikopleura dioica SNAPOd2T00024998001 N 0.000
OFLC_0001427401 Onchocerca flexuosa OFLC_0001427401 N 0.000
nOo.2.0.1.g07179 Onchocerca ochengi nOo.2.0.1.g07179 N 0.000
nOo.2.0.1.g05355 Onchocerca ochengi nOo.2.0.1.g05355 N 0.000
WBGene00240888 Onchocerca volvulus WBGene00240888 N 0.000
Ogr15245 Ophisaurus gracilis Ogr15245 N 0.000
ENSOANG00000004576 Ornithorhynchus anatinus ENSOANG00000004576 N 0.000
ONECUT1 Pan troglodytes ENSPTRG00000007090 I 0.000
ENSPMAG00000007938 Petromyzon marinus ENSPMAG00000007938 N 0.000
scaffold144-EXSNAP2012.47 Pristionchus exspectatus scaffold144-EXSNAP2012.47 N 0.000
PPA07282 Pristionchus pacificus PPA07282 N 0.000
PXEA_0001210701 Protopolystoma xenopodis PXEA_0001210701 N 0.000
RPRC001057 Rhodnius prolixus RPRC001057 N 0.000
nRc.2.0.1.g06026 Romanomermis culicivorax nRc.2.0.1.g06026 N 0.000
ENSSHAG00000014706 Sarcophilus harrisii ENSSHAG00000014706 N 0.000
ENSSHAG00000018152 Sarcophilus harrisii ENSSHAG00000018152 I 0.000
SMRZ_0001320201 Schistosoma margrebowiei SMRZ_0001320201 N 0.000
SMTD_0000822401 Schistosoma mattheei SMTD_0000822401 N 0.000
SROB_0001256401 Schistosoma rodhaini SROB_0001256401 N 0.000
SINV23673 Solenopsis invicta SINV23673 N 0.000
L889_g23716 Steinernema feltiae L889_g23716 I 0.000
L898_g28854 Steinernema monticolum L898_g28854 I 0.000
L892_g9685 Steinernema scapterisci L892_g9685 N 0.000
SVUK_0000254701 Strongylus vulgaris SVUK_0000254701 N 0.000
ONECUT2 Sus scrofa ENSSSCG00000004540 N 0.000
SMUV_0001096901 Syphacia muris SMUV_0001096901 N 0.000
ENSTRUG00000003652 Takifugu rubripes ENSTRUG00000003652 N 0.000
onecut1 Takifugu rubripes ENSTRUG00000000994 N 0.000
ENSTNIG00000003240 Tetraodon nigroviridis ENSTNIG00000003240 N 0.000
D917_03504 Trichinella nativa D917_03504 N 0.000
EFV55311 Trichinella spiralis EFV55311 N 0.000
EFV46387 Trichinella spiralis EFV46387 N 0.000
D918_08254 Trichuris suis D918_08254 N 0.000
onecut2 Xenopus tropicalis XB-GENE-485246 N 0.000
ENSXMAG00000012192 Xiphophorus maculatus ENSXMAG00000012192 N 0.000
L798_07541 Zootermopsis nevadensis L798_07541 N 0.000