CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sb01g010690
(
Sorghum bicolor
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
Sb01g010690
T344334_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.943
0.615
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.866
0.399
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb01g010690.1
TCP
119
273
AARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKAAIQEIMADDVDASSECVEDGSSSLSVDGKHNPAEQLGDQKPKGNGRSEGKKPAKSRKAATTPKPPRKSGNNAHPVPDKETRAKARERARERTKEKHRMR
Links
Other
TCP
family TFs
Other
Sorghum bicolor
TFs
117 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AC233950.1_FG002
Zea mays
AC233950.1_FG002
I
0.960
MLOC_70116
Hordeum vulgare
MLOC_70116
I
0.954
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
0.953
TRIUR3_31795
Triticum urartu
TRIUR3_31795
I
0.953
Traes_4DS_59A46B69A
Triticum aestivum
Traes_4DS_59A46B69A
I
0.953
Traes_4AL_75D069945
Triticum aestivum
Traes_4AL_75D069945
I
0.953
Traes_4BS_DC076554D
Triticum aestivum
Traes_4BS_DC076554D
I
0.952
Si038692m.g
Setaria italica
Si038692m.g
I
0.952
OPUNC03G28490
Oryza punctata
OPUNC03G28490
I
0.949
BRADI1G11060
Brachypodium distachyon
BRADI1G11060
I
0.948
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
0.945
Pavir.Ia00838
Panicum virgatum
Pavir.Ia00838
I
0.945
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.943
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.943
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.943
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.943
AC190734.2_FG003
Zea mays
AC190734.2_FG003
I
0.943
TB1
Oryza sativa
OS03G0706500
D
0.943
OMERI03G27910
Oryza meridionalis
OMERI03G27910
I
0.940
ORGLA03G0289500
Oryza glaberrima
ORGLA03G0289500
I
0.934
OBART03G31290
Oryza barthii
OBART03G31290
I
0.934
GSMUA_Achr2G22480_001
Musa acuminata
GSMUA_Achr2G22480_001
I
0.887
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.883
OB03G38320
Oryza brachyantha
OB03G38320
I
0.883
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.883
Traes_5DL_46A3B0DAB1
Triticum aestivum
Traes_5DL_46A3B0DAB1
I
0.875
SapurV1A.0682s0140
Salix purpurea
SapurV1A.0682s0140
I
0.874
GRMZM2G031905
Zea mays
GRMZM2G031905
I
0.874
BRC2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_2000933
I
0.871
GRMZM2G110242
Zea mays
GRMZM2G110242
I
0.870
cassava10552.m1
Manihot esculenta
cassava10552.m1
I
0.868
GRMZM2G062711
Zea mays
GRMZM2G062711
I
0.867
Bostr.26959s0184
Boechera stricta
Bostr.26959s0184
I
0.867
PK12240.1
Cannabis sativa
PK12240.1
D
0.866
BRC2
Arabidopsis thaliana
AT1G68800
I
0.865
Lus10035055.g
Linum usitatissimum
Lus10035055.g
I
0.865
Cucsa.280880
Cucumis sativus
Cucsa.280880
I
0.864
mgf024687m
Mimulus guttatus
mgf024687m
I
0.863
Carubv10020487m.g
Capsella rubella
Carubv10020487m.g
I
0.863
Bostr.26959s0002
Boechera stricta
Bostr.26959s0002
I
0.863
Cagra.1157s0001
Capsella grandiflora
Cagra.1157s0001
I
0.863
GSMUA_Achr2G21050_001
Musa acuminata
GSMUA_Achr2G21050_001
I
0.862
Aquca_002_01093
Aquilegia coerulea
Aquca_002_01093
I
0.861
Pavir.Fa00870
Panicum virgatum
Pavir.Fa00870
I
0.859
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.858
Carubv10020555m.g
Capsella rubella
Carubv10020555m.g
I
0.858
BRADI4G29980
Brachypodium distachyon
BRADI4G29980
I
0.854
Pm030202
Prunus mume
Pm030202
I
0.851
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.851
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
0.850
GSMUA_Achr10G25520_001
Musa acuminata
GSMUA_Achr10G25520_001
I
0.850
F775_01923
Aegilops tauschii
F775_01923
I
0.848
30167.m000856
Ricinus communis
30167.m000856
I
0.846
TRIUR3_20728
Triticum urartu
TRIUR3_20728
I
0.846
POPTR_0017s13980
Populus trichocarpa
POPTR_0017s13980
I
0.845
Lus10021713.g
Linum usitatissimum
Lus10021713.g
I
0.845
MLOC_4614
Hordeum vulgare
MLOC_4614
I
0.845
LjSGA_018294.2
Lotus japonicus
LjSGA_018294.2
I
0.844
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
0.843
TCM_012252
Theobroma cacao
TCM_012252
I
0.843
MDP0000272980
Malus domestica
MDP0000272980
I
0.843
Cagra.1125s0016
Capsella grandiflora
Cagra.1125s0016
I
0.843
Cagra.1681s0023
Capsella grandiflora
Cagra.1681s0023
I
0.841
Carubv10013748m.g
Capsella rubella
Carubv10013748m.g
I
0.841
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.840
OS09G0410500
Oryza sativa
OS09G0410500
I
0.840
OS08G0432300
Oryza sativa
OS08G0432300
I
0.840
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.840
ORUFI08G17540
Oryza rufipogon
ORUFI08G17540
I
0.840
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.840
OGLUM08G16380
Oryza glumaepatula
OGLUM08G16380
I
0.840
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.840
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.840
OBART09G10040
Oryza barthii
OBART09G10040
I
0.840
BGIOSGA028717
Oryza indica
BGIOSGA028717
I
0.840
Bostr.19424s0807
Boechera stricta
Bostr.19424s0807
I
0.839
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.839
TCP1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001059
I
0.839
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.838
Cucsa.283930
Cucumis sativus
Cucsa.283930
I
0.837
GRMZM2G055024
Zea mays
GRMZM2G055024
I
0.837
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.836
SapurV1A.0301s0010
Salix purpurea
SapurV1A.0301s0010
I
0.836
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.834
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.833
ORGLA08G0137200
Oryza glaberrima
ORGLA08G0137200
I
0.832
PDK_20s1689851g001
Phoenix dactylifera
PDK_20s1689851g001
I
0.832
gene03882-v1.0-hybrid
Fragaria vesca
gene03882-v1.0-hybrid
I
0.832
MLOC_58142
Hordeum vulgare
MLOC_58142
I
0.831
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.831
evm.TU.supercontig_179.29
Carica papaya
evm.TU.supercontig_179.29
I
0.830
Sb07g021140
Sorghum bicolor
Sb07g021140
I
0.830
Traes_5BL_19F383CC71
Triticum aestivum
Traes_5BL_19F383CC71
I
0.829
Thhalv10021948m.g
Eutrema salsugineum
Thhalv10021948m.g
N
0.829
GLYMA05G07943
Glycine max
GLYMA05G07943
I
0.829
Bo3g071560
Brassica oleracea
Bo3g071560
I
0.828
Cucsa.113660
Cucumis sativus
Cucsa.113660
N
0.828
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.828
Si033183m.g
Setaria italica
Si033183m.g
I
0.827
Pavir.Ba01820
Panicum virgatum
Pavir.Ba01820
I
0.827
Pavir.Bb02154
Panicum virgatum
Pavir.Bb02154
I
0.827
Cucsa.238090
Cucumis sativus
Cucsa.238090
I
0.826
Si015230m.g
Setaria italica
Si015230m.g
I
0.825
LPERR08G12880
Leersia perrieri
LPERR08G12880
I
0.825
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.825
Bra001710
Brassica rapa
Bra001710
I
0.825
BRC1
Arabidopsis thaliana
AT3G18550
I
0.825
BRC1
Arabidopsis lyrata
scaffold_302193.1
N
0.825
SapurV1A.1895s0010
Salix purpurea
SapurV1A.1895s0010
I
0.824
Bo5g117410
Brassica oleracea
Bo5g117410
N
0.824
SapurV1A.1895s0020
Salix purpurea
SapurV1A.1895s0020
I
0.824
ONIVA08G16720
Oryza nivara
ONIVA08G16720
I
0.823
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.822
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
0.822
OMERI08G12900
Oryza meridionalis
OMERI08G12900
I
0.822
Bra037579
Brassica rapa
Bra037579
I
0.822
Bo1g117490
Brassica oleracea
Bo1g117490
I
0.822