Sb03g019411 (Sorghum bicolor)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Sb03g019411 T344341_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN

NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.889 0.644
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC

GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.889 0.644
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH

DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.889 0.644
TCP20
M11397_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.889 0.644
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.883 0.644
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC

GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.871 0.589
PCF2
M11399_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.855 0.575
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH

DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.852 0.644
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC

GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.848 0.630
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC

GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.844 0.644
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC

GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.841 0.548
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC

GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.822 0.630
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb03g019411.1 TCP 62 165

Links

Other TCP family TFs
Other Sorghum bicolor TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Sb03g013360 Sorghum bicolor Sb03g013360 I 0.953
Sb06g016340 Sorghum bicolor Sb06g016340 I 0.949
Sb08g021725 Sorghum bicolor Sb08g021725 I 0.932
ONIVA02G28000 Oryza nivara ONIVA02G28000 I 0.928
OMERI02G02280 Oryza meridionalis OMERI02G02280 I 0.927
Sb03g044320 Sorghum bicolor Sb03g044320 I 0.911
GSMUA_Achr7G02680_001 Musa acuminata GSMUA_Achr7G02680_001 I 0.910
SELMODRAFT_404061 Selaginella moellendorffii SELMODRAFT_404061 I 0.901
Solyc02g094290.1 Solanum lycopersicum Solyc02g094290.1 I 0.899
OS02G0641100 Oryza sativa OS02G0641100 I 0.897
Lus10037046.g Linum usitatissimum Lus10037046.g I 0.897
Aquca_021_00091 Aquilegia coerulea Aquca_021_00091 I 0.894
GSMUA_Achr8G12010_001 Musa acuminata GSMUA_Achr8G12010_001 I 0.892
ONIVA01G48370 Oryza nivara ONIVA01G48370 I 0.892
GSMUA_Achr5G25030_001 Musa acuminata GSMUA_Achr5G25030_001 I 0.891
POPTR_0001s13500 Populus trichocarpa POPTR_0001s13500 I 0.891
TCP20 Arabidopsis thaliana AT3G27010 D 0.889
OB01G51240 Oryza brachyantha OB01G51240 I 0.889
GSMUA_Achr7G23010_001 Musa acuminata GSMUA_Achr7G23010_001 I 0.888
Gorai.006G043800 Gossypium raimondii Gorai.006G043800 I 0.886
AT-TCP20 Arabidopsis lyrata fgenesh2_kg.5__478__AT3G27010.1 D 0.883
GRMZM2G034638 Zea mays GRMZM2G034638 I 0.878
OMERI01G39320 Oryza meridionalis OMERI01G39320 I 0.878
OGLUM01G46570 Oryza glumaepatula OGLUM01G46570 I 0.878
GRMZM2G092214 Zea mays GRMZM2G092214 I 0.878
OPUNC01G41170 Oryza punctata OPUNC01G41170 I 0.878
OS01G0924400 Oryza sativa OS01G0924400 I 0.878
OMERI04G14330 Oryza meridionalis OMERI04G14330 I 0.878
Pavir.J03131 Panicum virgatum Pavir.J03131 I 0.878
BRADI2G59240 Brachypodium distachyon BRADI2G59240 I 0.878
ORUFI01G45710 Oryza rufipogon ORUFI01G45710 I 0.878
BGIOSGA005085 Oryza indica BGIOSGA005085 I 0.878
OGLUM02G26080 Oryza glumaepatula OGLUM02G26080 I 0.876
PGSC0003DMG400021568 Solanum tuberosum PGSC0003DMG400021568 I 0.875
TRAES3BF146000020CFD_g Triticum aestivum TRAES3BF146000020CFD_g I 0.875
OS04G0542302 Oryza sativa OS04G0542302 I 0.875
MLOC_49381 Hordeum vulgare MLOC_49381 I 0.873
LPERR01G36850 Leersia perrieri LPERR01G36850 I 0.873
Eucgr.B03529 Eucalyptus grandis Eucgr.B03529 I 0.872
gene18961-v1.0-hybrid Fragaria vesca gene18961-v1.0-hybrid I 0.871
LjSGA_053525.1 Lotus japonicus LjSGA_053525.1 D 0.871
Solyc09g008030.1 Solanum lycopersicum Solyc09g008030.1 I 0.871
Pm023748 Prunus mume Pm023748 I 0.870
POPTR_0014s07450 Populus trichocarpa POPTR_0014s07450 I 0.867
GSMUA_Achr8G00050_001 Musa acuminata GSMUA_Achr8G00050_001 I 0.866
GSMUA_Achr6G02720_001 Musa acuminata GSMUA_Achr6G02720_001 I 0.866
GSMUA_Achr11G03130_001 Musa acuminata GSMUA_Achr11G03130_001 I 0.865
Bostr.25993s0206 Boechera stricta Bostr.25993s0206 I 0.864
Cla018905 Citrullus lanatus Cla018905 I 0.864
POPTR_0002s15360 Populus trichocarpa POPTR_0002s15360 I 0.864
GSMUA_Achr1G27500_001 Musa acuminata GSMUA_Achr1G27500_001 I 0.864
OPUNC08G20520 Oryza punctata OPUNC08G20520 I 0.863
VIT_18s0117g00340 Vitis vinifera VIT_18s0117g00340 I 0.861
30174.m008944 Ricinus communis 30174.m008944 I 0.860
GSMUA_Achr11G10940_001 Musa acuminata GSMUA_Achr11G10940_001 I 0.858
VIT_02s0025g04590 Vitis vinifera VIT_02s0025g04590 I 0.858
ORUFI01G24090 Oryza rufipogon ORUFI01G24090 I 0.857
AMTR_s00009p00081210 Amborella trichopoda AMTR_s00009p00081210 I 0.856
ORGLA01G0346000 Oryza glaberrima ORGLA01G0346000 I 0.856
Aquca_030_00105 Aquilegia coerulea Aquca_030_00105 I 0.856
OBART08G22390 Oryza barthii OBART08G22390 I 0.855
ORUFI08G24920 Oryza rufipogon ORUFI08G24920 I 0.855
OMERI08G17330 Oryza meridionalis OMERI08G17330 I 0.855
GSMUA_Achr11G15540_001 Musa acuminata GSMUA_Achr11G15540_001 I 0.855
LPERR08G19160 Leersia perrieri LPERR08G19160 I 0.855
Pavir.J12088 Panicum virgatum Pavir.J12088 I 0.855
PCF2 Oryza sativa OS08G0544800 D 0.855
Cucsa.054000 Cucumis sativus Cucsa.054000 I 0.855
AMTR_s00016p00227430 Amborella trichopoda AMTR_s00016p00227430 I 0.855
OGLUM08G23730 Oryza glumaepatula OGLUM08G23730 I 0.855
ONIVA08G25460 Oryza nivara ONIVA08G25460 I 0.855
PCF2 Oryza indica BGIOSGA026548 I 0.855
GRMZM2G107031 Zea mays GRMZM2G107031 I 0.855
GLYMA10G06515 Glycine max GLYMA10G06515 I 0.854
Eucgr.A01143 Eucalyptus grandis Eucgr.A01143 I 0.854
GSMUA_AchrUn_randomG00900_001 Musa acuminata GSMUA_AchrUn_randomG00900_001 I 0.854
Ciclev10015977m.g Citrus clementina Ciclev10015977m.g I 0.853
cassava35625.valid.m1 Manihot esculenta cassava35625.valid.m1 I 0.853
orange1.1g021111m.g Citrus sinensis orange1.1g021111m.g I 0.853
Bra000395 Brassica rapa Bra000395 I 0.853
TCM_008601 Theobroma cacao TCM_008601 I 0.852
Lus10015760.g Linum usitatissimum Lus10015760.g I 0.852
SELMODRAFT_438214 Selaginella moellendorffii SELMODRAFT_438214 I 0.852
cassava45561.m1 Manihot esculenta cassava45561.m1 D 0.852
MDP0000260056 Malus domestica MDP0000260056 I 0.851
AMTR_s00069p00171910 Amborella trichopoda AMTR_s00069p00171910 I 0.851
POPTR_0001s08590 Populus trichocarpa POPTR_0001s08590 I 0.851
Ciclev10012754m.g Citrus clementina Ciclev10012754m.g I 0.850
Bra022568 Brassica rapa Bra022568 I 0.850
GSMUA_Achr4G00500_001 Musa acuminata GSMUA_Achr4G00500_001 I 0.849
30131.m007038 Ricinus communis 30131.m007038 I 0.848
AT-TCP20 Vitis vinifera VIT_14s0068g01690 I 0.848
Pm018100 Prunus mume Pm018100 I 0.848
GLYMA19G26560 Glycine max GLYMA19G26560 D 0.848
Bo9g008110 Brassica oleracea Bo9g008110 I 0.848
Gorai.012G084600 Gossypium raimondii Gorai.012G084600 I 0.848
Gorai.001G273300 Gossypium raimondii Gorai.001G273300 I 0.848
TCM_005447 Theobroma cacao TCM_005447 I 0.848
mgf024922m Mimulus guttatus mgf024922m I 0.848
Aquca_011_00080 Aquilegia coerulea Aquca_011_00080 I 0.848
POPTR_0003s16630 Populus trichocarpa POPTR_0003s16630 I 0.848
PRUPE_ppa015342mg Prunus persica PRUPE_ppa015342mg I 0.848
MDP0000915616 Malus domestica MDP0000915616 I 0.847
OB08G29160 Oryza brachyantha OB08G29160 I 0.847
Bo00998s020 Brassica oleracea Bo00998s020 I 0.847
VIT_08s0040g01600 Vitis vinifera VIT_08s0040g01600 I 0.847
SapurV1A.0453s0090 Salix purpurea SapurV1A.0453s0090 I 0.847
POPTR_0017s09820 Populus trichocarpa POPTR_0017s09820 I 0.846
Cla002127 Citrullus lanatus Cla002127 I 0.846
SapurV1A.0169s0020 Salix purpurea SapurV1A.0169s0020 I 0.846
Gorai.008G157300 Gossypium raimondii Gorai.008G157300 I 0.845
PGSC0003DMG400020247 Solanum tuberosum PGSC0003DMG400020247 I 0.845
POPTR_0001s33470 Populus trichocarpa POPTR_0001s33470 I 0.845
Bostr.0556s0373 Boechera stricta Bostr.0556s0373 I 0.844
Bra039096 Brassica rapa Bra039096 I 0.844
PK13314.1 Cannabis sativa PK13314.1 D 0.844
Cagra.4222s0009 Capsella grandiflora Cagra.4222s0009 I 0.844
PRUPE_ppa009925mg Prunus persica PRUPE_ppa009925mg I 0.844
Thhalv10004391m.g Eutrema salsugineum Thhalv10004391m.g I 0.844
SapurV1A.0123s0030 Salix purpurea SapurV1A.0123s0030 I 0.844
Lus10032022.g Linum usitatissimum Lus10032022.g I 0.844
Carubv10017630m.g Capsella rubella Carubv10017630m.g I 0.844
Cla018593 Citrullus lanatus Cla018593 I 0.844
TCM_017259 Theobroma cacao TCM_017259 I 0.844
Pm016133 Prunus mume Pm016133 I 0.844
OBART01G21400 Oryza barthii OBART01G21400 I 0.843
Pm019399 Prunus mume Pm019399 I 0.843
LjSGA_018700.2 Lotus japonicus LjSGA_018700.2 I 0.842
cassava26720.m1 Manihot esculenta cassava26720.m1 I 0.842
cassava35071.m1 Manihot esculenta cassava35071.m1 I 0.842
Ciclev10032374m.g Citrus clementina Ciclev10032374m.g I 0.841
orange1.1g023883m.g Citrus sinensis orange1.1g023883m.g I 0.841
cassava6552.valid.m1 Manihot esculenta cassava6552.valid.m1 I 0.841
TCP19 Arabidopsis thaliana AT5G51910 D 0.841
29929.m004612 Ricinus communis 29929.m004612 I 0.841
cassava36888.valid.m1 Manihot esculenta cassava36888.valid.m1 I 0.841
evm.TU.supercontig_5.261 Carica papaya evm.TU.supercontig_5.261 I 0.840
TCM_036394 Theobroma cacao TCM_036394 I 0.840
GLYMA08G41070 Glycine max GLYMA08G41070 I 0.840
MTR_7g028160 Medicago truncatula MTR_7g028160 I 0.840
POPTR_0006s12770 Populus trichocarpa POPTR_0006s12770 I 0.837
OB11G13800 Oryza brachyantha OB11G13800 I 0.837
MDP0000523096 Malus domestica MDP0000523096 I 0.836
Solyc11g020670.1 Solanum lycopersicum Solyc11g020670.1 I 0.836
TCM_022197 Theobroma cacao TCM_022197 I 0.833
PK09668.1 Cannabis sativa PK09668.1 I 0.833
PRUPE_ppa021535mg Prunus persica PRUPE_ppa021535mg I 0.833
fgenesh2_kg.1__3639__AT1G35560.1 Arabidopsis lyrata fgenesh2_kg.1__3639__AT1G35560.1 I 0.833
SapurV1A.0282s0180 Salix purpurea SapurV1A.0282s0180 I 0.832
GSMUA_Achr10G11790_001 Musa acuminata GSMUA_Achr10G11790_001 I 0.831
Bra016090 Brassica rapa Bra016090 I 0.831
Bra025244 Brassica rapa Bra025244 I 0.830
Gorai.011G086900 Gossypium raimondii Gorai.011G086900 I 0.830
Bo7g084120 Brassica oleracea Bo7g084120 I 0.830
MTR_8g033070 Medicago truncatula MTR_8g033070 I 0.829
PRUPE_ppa018648mg Prunus persica PRUPE_ppa018648mg I 0.829
OMERI09G12430 Oryza meridionalis OMERI09G12430 I 0.829
gene01346-v1.0-hybrid Fragaria vesca gene01346-v1.0-hybrid I 0.828
GLYMA13G20710 Glycine max GLYMA13G20710 I 0.828
SapurV1A.0012s0470 Salix purpurea SapurV1A.0012s0470 I 0.828
POPTR_0004s04600 Populus trichocarpa POPTR_0004s04600 I 0.828
MDP0000123919 Malus domestica MDP0000123919 I 0.828
PRUPE_ppa010032mg Prunus persica PRUPE_ppa010032mg I 0.827
Pm007054 Prunus mume Pm007054 I 0.827
Pm030138 Prunus mume Pm030138 I 0.827
estExt_fgenesh1_pg.C_4460008 Physcomitrella patens estExt_fgenesh1_pg.C_4460008 I 0.827
estExt_fgenesh1_pg.C_3560021 Physcomitrella patens estExt_fgenesh1_pg.C_3560021 I 0.827
SapurV1A.0103s0310 Salix purpurea SapurV1A.0103s0310 I 0.826
PK13567.1 Cannabis sativa PK13567.1 I 0.826
TCM_007700 Theobroma cacao TCM_007700 I 0.826
Gorai.005G211900 Gossypium raimondii Gorai.005G211900 I 0.826
cassava35647.valid.m1 Manihot esculenta cassava35647.valid.m1 I 0.826
GSMUA_Achr11G01790_001 Musa acuminata GSMUA_Achr11G01790_001 I 0.826
Cucsa.166230 Cucumis sativus Cucsa.166230 I 0.826
PGSC0003DMG400016363 Solanum tuberosum PGSC0003DMG400016363 I 0.826
Cla020356 Citrullus lanatus Cla020356 I 0.826
Gorai.007G094200 Gossypium raimondii Gorai.007G094200 I 0.826
Gorai.013G068600 Gossypium raimondii Gorai.013G068600 I 0.826
Thhalv10023507m.g Eutrema salsugineum Thhalv10023507m.g I 0.825
BRADI4G35520 Brachypodium distachyon BRADI4G35520 I 0.825
MLOC_35578 Hordeum vulgare MLOC_35578 I 0.825
MDP0000264920 Malus domestica MDP0000264920 I 0.824
MDP0000139807 Malus domestica MDP0000139807 I 0.823
POPTR_0016s11350 Populus trichocarpa POPTR_0016s11350 I 0.822
fgenesh2_kg.2__549__AT1G58100.1 Arabidopsis lyrata fgenesh2_kg.2__549__AT1G58100.1 I 0.822
Bra027886 Brassica rapa Bra027886 I 0.822
MDP0000681033 Malus domestica MDP0000681033 I 0.822
MDP0000393985 Malus domestica MDP0000393985 I 0.822
Carubv10020411m.g Capsella rubella Carubv10020411m.g I 0.822
TCP8 Arabidopsis thaliana AT1G58100 D 0.822
Bostr.30057s0082 Boechera stricta Bostr.30057s0082 I 0.822