CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sb07g021140
(
Sorghum bicolor
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
Sb07g021140
T344353_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.852
0.522
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.828
0.478
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC
GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.825
0.478
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb07g021140.1
TCP
78
189
PFRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLTQSKPAIDRLVDAAEPAVALVSGGPPTVVKGRGEGNSSSTCCLTVDSREEATEKARSRGGG
Links
Other
TCP
family TFs
Other
Sorghum bicolor
TFs
117 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy