TCP4 (Arabidopsis lyrata)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 scaffold_301743.1 T344362_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC

GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.980 0.982
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN

NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.962 0.623
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH

DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.962 0.623
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN

NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.962 0.623
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.941 0.544
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.900 0.439
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN

NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.891 0.456
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC

GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.888 0.439
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.880 0.439
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.865 0.395
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.855 0.421
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.855 0.421
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.853 0.386
For this family, TFs with SR scores > 0.822 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02514_2.00 TCP 52 261

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_301743.1 TCP 75 284

Links

Other TCP family TFs
Other Arabidopsis lyrata TFs

420 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TTRE_0000251601 Trichuris trichiura TTRE_0000251601 N 0.000
nDi.2.2.2.g01364 Dirofilaria immitis nDi.2.2.2.g01364 N 0.000
NBR_0001408501 Nippostrongylus brasiliensis NBR_0001408501 N 0.000
nAv.1.0.1.g02714 Acanthocheilonema viteae nAv.1.0.1.g02714 N 0.000
MhA1_Contig123.frz3.gene102 Meloidogyne hapla MhA1_Contig123.frz3.gene102 N 0.000
L898_g24378 Steinernema monticolum L898_g24378 N 0.000
L893_g33137 Steinernema glaseri L893_g33137 N 0.000
L892_g27191 Steinernema scapterisci L892_g27191 N 0.000
L889_g7644 Steinernema feltiae L889_g7644 N 0.000
L596_g21289 Steinernema carpocapsae L596_g21289 N 0.000
HPLM_0001420401 Haemonchus placei HPLM_0001420401 N 0.000
NECAME_01427 Necator americanus NECAME_01427 N 0.000
nLs.2.1.2.g03389 Litomosoides sigmodontis nLs.2.1.2.g03389 N 0.000
nOo.2.0.1.g07016 Onchocerca ochengi nOo.2.0.1.g07016 N 0.000
TELCIR_14024 Teladorsagia circumcincta TELCIR_14024 N 0.000
TCNE_0001271001 Toxocara canis TCNE_0001271001 N 0.000
TCLT_0000380801 Thelazia callipaeda TCLT_0000380801 N 0.000
SVE_0167700 Strongyloides venezuelensis SVE_0167700 N 0.000
SSTP_0000565500 Strongyloides stercoralis SSTP_0000565500 N 0.000
SPAL_0000484600 Strongyloides papillosus SPAL_0000484600 N 0.000
PTRK_0000871700 Parastrongyloides trichosuri PTRK_0000871700 N 0.000
OFLC_0000335001 Onchocerca flexuosa OFLC_0000335001 N 0.000
OESDEN_00417 Oesophagostomum dentatum OESDEN_00417 N 0.000
nRc.2.0.1.g11083 Romanomermis culicivorax nRc.2.0.1.g11083 N 0.000
HCOI00027700 Haemonchus contortus HCOI00027700 N 0.000
GPUH_0001856701 Gongylonema pulchrum GPUH_0001856701 N 0.000
Minc15071 Meloidogyne incognita Minc15071 N 0.000
Minc05207 Meloidogyne incognita Minc05207 N 0.000
WBGene00237491 Onchocerca volvulus WBGene00237491 N 0.000
aha-1 Caenorhabditis elegans WBGene00000095 N 0.000
LOAG_08661 Loa loa LOAG_08661 N 0.000
EFV53021 Trichinella spiralis EFV53021 N 0.000
CRE23963 Caenorhabditis remanei CRE23963 N 0.000
CJA09659 Caenorhabditis japonica CJA09659 N 0.000
CBN21788 Caenorhabditis brenneri CBN21788 N 0.000
CBN20344 Caenorhabditis brenneri CBN20344 N 0.000
ACAC_0000261401 Angiostrongylus cantonensis ACAC_0000261401 N 0.000
ACOC_0000445401 Angiostrongylus costaricensis ACOC_0000445401 N 0.000
ALUE_0000466001 Ascaris lumbricoides ALUE_0000466001 N 0.000
EVEC_0000439301 Enterobius vermicularis EVEC_0000439301 N 0.000
DME_0000607201 Dracunculus medinensis DME_0000607201 N 0.000
DICVIV_02602 Dictyocaulus viviparus DICVIV_02602 N 0.000
D918_05776 Trichuris suis D918_05776 N 0.000
augustus_masked-nMf.1.1.scaf28485-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf28485-processed-gene-0.0 N 0.000
ASU_08380 Ascaris suum ASU_08380 N 0.000
ASIM_0001352101 Anisakis simplex ASIM_0001352101 N 0.000
ANCDUO_07053 Ancylostoma duodenale ANCDUO_07053 N 0.000
ANCCEY_13945 Ancylostoma ceylanicum ANCCEY_13945 N 0.000
ANCCAN_24904 Ancylostoma caninum ANCCAN_24904 N 0.000
Bm2359 Brugia malayi Bm2359 N 0.000