CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si038692m.g
(
Setaria italica
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
Si038692m.g
T344395_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.938
0.596
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si038692m
TCP
114
270
AARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKSAIQEIMTDDASSECVEDGSSSLSVDGKPNPAELLGGGDQQPNKGNGRSGEGKKPAKARKPATTPKPPRKSSVNAHPVPDKETRAKARERARERTKEKHRMR
Links
Other
TCP
family TFs
Other
Setaria italica
TFs
79 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
0.975
Pavir.Ia00838
Panicum virgatum
Pavir.Ia00838
I
0.974
OMERI03G27910
Oryza meridionalis
OMERI03G27910
I
0.952
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.952
OBART03G31290
Oryza barthii
OBART03G31290
I
0.952
ORGLA03G0289500
Oryza glaberrima
ORGLA03G0289500
I
0.952
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
0.950
AC233950.1_FG002
Zea mays
AC233950.1_FG002
I
0.949
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.938
TB1
Oryza sativa
OS03G0706500
D
0.938
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.938
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.938
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.938
MLOC_70116
Hordeum vulgare
MLOC_70116
I
0.937
BRADI1G11060
Brachypodium distachyon
BRADI1G11060
I
0.937
TRIUR3_31795
Triticum urartu
TRIUR3_31795
I
0.934
Traes_4AL_75D069945
Triticum aestivum
Traes_4AL_75D069945
I
0.934
Traes_4DS_59A46B69A
Triticum aestivum
Traes_4DS_59A46B69A
I
0.934
Traes_4BS_DC076554D
Triticum aestivum
Traes_4BS_DC076554D
I
0.933
OPUNC03G28490
Oryza punctata
OPUNC03G28490
I
0.927
AC190734.2_FG003
Zea mays
AC190734.2_FG003
I
0.912
MLOC_4614
Hordeum vulgare
MLOC_4614
I
0.867
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.863
Pavir.Fa00870
Panicum virgatum
Pavir.Fa00870
I
0.848
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.848
evm.TU.supercontig_179.29
Carica papaya
evm.TU.supercontig_179.29
I
0.848
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.847
OS09G0410500
Oryza sativa
OS09G0410500
I
0.847
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.847
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.847
OBART09G10040
Oryza barthii
OBART09G10040
I
0.847
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.847
TRIUR3_20728
Triticum urartu
TRIUR3_20728
I
0.846
LPERR08G12880
Leersia perrieri
LPERR08G12880
I
0.844
MDP0000224810
Malus domestica
MDP0000224810
N
0.842
GSMUA_Achr2G21050_001
Musa acuminata
GSMUA_Achr2G21050_001
I
0.841
GRMZM2G110242
Zea mays
GRMZM2G110242
I
0.840
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.840
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
0.840
Si033183m.g
Setaria italica
Si033183m.g
I
0.839
Cagra.1681s0023
Capsella grandiflora
Cagra.1681s0023
I
0.839
Traes_5DL_46A3B0DAB1
Triticum aestivum
Traes_5DL_46A3B0DAB1
I
0.839
Carubv10013748m.g
Capsella rubella
Carubv10013748m.g
I
0.839
OB03G38320
Oryza brachyantha
OB03G38320
I
0.839
Bostr.19424s0807
Boechera stricta
Bostr.19424s0807
I
0.837
Sb07g021140
Sorghum bicolor
Sb07g021140
I
0.837
Si015230m.g
Setaria italica
Si015230m.g
I
0.836
Bo5g117410
Brassica oleracea
Bo5g117410
N
0.835
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
0.835
Pavir.Ba01820
Panicum virgatum
Pavir.Ba01820
I
0.834
GRMZM2G055024
Zea mays
GRMZM2G055024
I
0.834
mgf026636m
Mimulus guttatus
mgf026636m
I
0.830
GSMUA_Achr10G25520_001
Musa acuminata
GSMUA_Achr10G25520_001
I
0.830
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.830
Pm030202
Prunus mume
Pm030202
I
0.830
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.830
GSMUA_Achr2G22480_001
Musa acuminata
GSMUA_Achr2G22480_001
I
0.829
BRADI4G29980
Brachypodium distachyon
BRADI4G29980
I
0.829
Pavir.Bb02154
Panicum virgatum
Pavir.Bb02154
I
0.828
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.828
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.828
Traes_5BL_19F383CC71
Triticum aestivum
Traes_5BL_19F383CC71
I
0.828
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.827
Bo3g071560
Brassica oleracea
Bo3g071560
I
0.827
F775_01923
Aegilops tauschii
F775_01923
I
0.827
BRC1
Arabidopsis thaliana
AT3G18550
I
0.826
MLOC_58142
Hordeum vulgare
MLOC_58142
I
0.826
BGIOSGA028717
Oryza indica
BGIOSGA028717
I
0.826
ORUFI08G17540
Oryza rufipogon
ORUFI08G17540
I
0.826
OGLUM08G16380
Oryza glumaepatula
OGLUM08G16380
I
0.826
OS08G0432300
Oryza sativa
OS08G0432300
I
0.826
Thhalv10021948m.g
Eutrema salsugineum
Thhalv10021948m.g
N
0.826
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
0.825
Cla019282
Citrullus lanatus
Cla019282
N
0.825
Gorai.001G200400
Gossypium raimondii
Gorai.001G200400
I
0.824
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.823
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.823
Bra001710
Brassica rapa
Bra001710
I
0.823
BRC1
Arabidopsis lyrata
scaffold_302193.1
N
0.822