Solyc02g094290.1 (Solanum lycopersicum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Solyc02g094290.1 T344404_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN

NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.972 0.849
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC

GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.972 0.849
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH

DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.972 0.849
TCP20
M11397_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.972 0.849
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.971 0.849
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC

GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.965 0.740
PCF2
M11399_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.963 0.740
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC

GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.961 0.849
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC

GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.960 0.849
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC

GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.959 0.712
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH

DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.955 0.822
PK14653.1
M01317_2.00
Cannabis sativa
BGGSCCCAC

GTGGGSCCV
PBM
Lambert et al.(2019)
pTH11324
0.953 0.740
PK14653.1
M02517_2.00
Cannabis sativa
BTGGGCCCAV

BTGGGCCCAV
PBM
Weirauch et al.(2014)
pTH9586
0.953 0.740
VIT_15s0048g01150
M02515_2.00
Vitis vinifera
NNGGNCCCAC

GTGGGNCCNN
PBM
Weirauch et al.(2014)
pTH9294
0.953 0.753
TCP9
M01086_2.00
Arabidopsis thaliana
NNGGGCCCACN

NGTGGGCCCNN
PBM
Sullivan et al.(2014)
pTH9796
0.953 0.753
TCP9
M07281_2.00
Arabidopsis thaliana
RTGGGDCCCAC

GTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a
0.953 0.753
TCP9
M07282_2.00
Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN

NVNHNHNHHGTGGGYCCCACH
Dap-seq
OMalley et al.(2016)
At2g45680_col_b
0.953 0.753
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC

GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.948 0.753
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH

DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.948 0.753
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW

WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.948 0.753
TCP15
M11394_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.948 0.753
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC

GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.944 0.767
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN

NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.944 0.753
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9232
0.942 0.712
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC

GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.940 0.753
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN

NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.939 0.740
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN

NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.939 0.740
TCP23
M00891_2.00
Arabidopsis thaliana
NNGGKCCCAC

GTGGGMCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP23
0.931 0.712
TCP21
M07292_2.00
Arabidopsis thaliana
NNRTGGGDCCCACN

NGTGGGHCCCAYNN
Dap-seq
OMalley et al.(2016)
At5g08330_col_a
0.922 0.699
TCP21
M07293_2.00
Arabidopsis thaliana
RTRGGDCCCACH

DGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a
0.922 0.699
TCP7
M07294_2.00
Arabidopsis thaliana
RTGGGNCCCAC

GTGGGNCCCAY
Dap-seq
OMalley et al.(2016)
TCP7_col_a
0.922 0.699
OsI_08196
M02513_2.00
Oryza sativa
GGGCCCAC

GTGGGCCC
PBM
Weirauch et al.(2014)
pTH9274
0.915 0.644
OS02G0635800
M02512_2.00
Oryza sativa
NBGGGCCCVN

NBGGGCCCVN
PBM
Weirauch et al.(2014)
pTH8856
0.914 0.658
TCP11
M11395_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_01
0.877 0.658
TCP11
M11396_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_02
0.877 0.658
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc02g094290.1.1 TCP 35 107

Links

Other TCP family TFs
Other Solanum lycopersicum TFs

662 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_08202 Aegilops tauschii F775_08202 N 0.000
F775_17323 Aegilops tauschii F775_17323 N 0.000
F775_17324 Aegilops tauschii F775_17324 N 0.000
BRADI1G30140 Brachypodium distachyon BRADI1G30140 N 0.000
GLYMA11G16050 Glycine max GLYMA11G16050 N 0.000
LPERR06G23100 Leersia perrieri LPERR06G23100 N 0.000
OBART06G27540 Oryza barthii OBART06G27540 N 0.000
OB06G35370 Oryza brachyantha OB06G35370 N 0.000
ORGLA06G0232500 Oryza glaberrima ORGLA06G0232500 N 0.000
OGLUM06G28970 Oryza glumaepatula OGLUM06G28970 N 0.000
BGIOSGA020526 Oryza indica BGIOSGA020526 N 0.000
OLONG_023558 Oryza longistaminata OLONG_023558 N 0.000
OMERI06G27590 Oryza meridionalis OMERI06G27590 N 0.000
ONIVA06G30110 Oryza nivara ONIVA06G30110 N 0.000
OPUNC06G25210 Oryza punctata OPUNC06G25210 N 0.000
ORUFI06G29500 Oryza rufipogon ORUFI06G29500 N 0.000
OS06G0716800 Oryza sativa OS06G0716800 N 0.000
Pavir.J25286 Panicum virgatum Pavir.J25286 N 0.000
Pavir.J21984 Panicum virgatum Pavir.J21984 N 0.000
Pavir.Db00007 Panicum virgatum Pavir.Db00007 N 0.000
Pavir.J05283 Panicum virgatum Pavir.J05283 N 0.000
Si037105m.g Setaria italica Si037105m.g N 0.000
Si007107m.g Setaria italica Si007107m.g N 0.000
Sb10g030250 Sorghum bicolor Sb10g030250 N 0.000
TCM_042360 Theobroma cacao TCM_042360 N 0.000
Traes_7DL_7DDA16622 Triticum aestivum Traes_7DL_7DDA16622 N 0.000
Traes_7DL_70D4FDB2A Triticum aestivum Traes_7DL_70D4FDB2A N 0.000
Traes_7AL_C7CF7087B Triticum aestivum Traes_7AL_C7CF7087B N 0.000
Traes_5BS_FC54F9BEA Triticum aestivum Traes_5BS_FC54F9BEA N 0.000
TRIUR3_12850 Triticum urartu TRIUR3_12850 N 0.000
TRIUR3_23486 Triticum urartu TRIUR3_23486 N 0.000
ATBZIP24 Vitis vinifera VIT_13s0158g00380 N 0.000
GRMZM2G000171 Zea mays GRMZM2G000171 N 0.000
GRMZM2G055413 Zea mays GRMZM2G055413 N 0.000