CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc03g115010.1
(
Solanum lycopersicum
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
Solyc03g115010.1
T344407_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.934
0.368
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.934
0.368
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC
GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.932
0.382
TCP17
M07290_2.00
Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP17_col_a
0.930
0.382
TCP17
M07291_2.00
Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY
Dap-seq
OMalley et al.(2016)
TCP17_colamp_a
0.930
0.382
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY
RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.927
0.434
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC
GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.927
0.401
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY
RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.882
0.336
OS01G0213800
M11398_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.859
0.289
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC
GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.833
0.296
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.833
0.296
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.830
0.283
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.830
0.283
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.830
0.283
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.829
0.303
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC
GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.829
0.303
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc03g115010.1.1
TCP
52
241
FGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLEATKLDIDTLPPLPVPPEYFTRFQQPSHEEFSDVRAQWLNANTSYLEHGRNKSIASNEESNQEDNMFTLGNQRSSNLPGMPFNSYNYQWDHQPNSNLSLGHFGHNHSFSSQIDDDQSHQNTSFPLSLGSSSSPFPSSSQ
Links
Other
TCP
family TFs
Other
Solanum lycopersicum
TFs
402 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy