Solyc10g008780.1 (Solanum lycopersicum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Solyc10g008780.1 T344426_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC

GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.904 0.325
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.901 0.318
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN

NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.899 0.325
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH

DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.899 0.325
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN

NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.899 0.325
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.898 0.325
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.854 0.312
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN

NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.844 0.318
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC

GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.844 0.318
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.827 0.261
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.827 0.261
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc10g008780.1.1 TCP 103 479

Links

Other TCP family TFs
Other Solanum lycopersicum TFs

312 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000007406 Ailuropoda melanoleuca ENSAMEG00000007406 I 0.000
ZSCAN22 Canis familiaris ENSCAFG00000031654 I 0.000
ZNF544 Callithrix jacchus ENSCJAG00000000329 I 0.000
ENSCSAG00000001601 Chlorocebus sabaeus ENSCSAG00000001601 I 0.000
ZSCAN22 Dasypus novemcinctus ENSDNOG00000043376 I 0.000
ENSECAG00000002455 Equus caballus ENSECAG00000002455 I 0.000
ZSCAN22 Felis catus ENSFCAG00000021958 I 0.000
ZSCAN22 Homo sapiens ENSG00000182318 D 0.000
ZSCAN22 Gorilla gorilla ENSGGOG00000002894 I 0.000
ZSCAN22 Macaca mulatta ENSMMUG00000009311 I 0.000
ENSNLEG00000011134 Nomascus leucogenys ENSNLEG00000011134 I 0.000
ZSCAN22 Oryctolagus cuniculus ENSOCUG00000022361 I 0.000
ZSCAN22 Otolemur garnettii ENSOGAG00000030930 I 0.000
ENSP00000384351 Macaca fascicularis ENSP00000384351 I 0.000
ENSPANG00000015371 Papio anubis ENSPANG00000015371 I 0.000
ZSCAN22 Pan troglodytes ENSPTRG00000011587 I 0.000