TCM_022798 (Theobroma cacao)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 TCM_022798 T344447_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.841 0.582
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.841 0.582
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.841 0.582
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.841 0.582
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.835 0.545
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.833 0.564
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.832 0.582
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY08401 TCP 37 91
EOY08402 TCP 37 91
EOY08403 TCP 37 91

Links

Other TCP family TFs
Other Theobroma cacao TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.009G398700 Gossypium raimondii Gorai.009G398700 I 0.965
MLOC_35578 Hordeum vulgare MLOC_35578 I 0.912
OB01G51240 Oryza brachyantha OB01G51240 I 0.903
BRADI3G60350 Brachypodium distachyon BRADI3G60350 I 0.901
PK09668.1 Cannabis sativa PK09668.1 I 0.901
evm.TU.supercontig_65.17 Carica papaya evm.TU.supercontig_65.17 I 0.898
OGLUM02G26080 Oryza glumaepatula OGLUM02G26080 I 0.897
OS02G0641100 Oryza sativa OS02G0641100 I 0.897
Pavir.J36496 Panicum virgatum Pavir.J36496 I 0.892
Pm028040 Prunus mume Pm028040 N 0.887
OB04G26360 Oryza brachyantha OB04G26360 I 0.876
OPUNC03G20560 Oryza punctata OPUNC03G20560 I 0.864
OB11G13800 Oryza brachyantha OB11G13800 I 0.862
LPERR04G02520 Leersia perrieri LPERR04G02520 I 0.859
AC213524.3_FG003 Zea mays AC213524.3_FG003 I 0.858
GSMUA_Achr4G00500_001 Musa acuminata GSMUA_Achr4G00500_001 I 0.856
Solyc02g094290.1 Solanum lycopersicum Solyc02g094290.1 I 0.854
BRADI5G02880 Brachypodium distachyon BRADI5G02880 I 0.850
LjSGA_036609.1 Lotus japonicus LjSGA_036609.1 N 0.849
POPTR_0009s01480 Populus trichocarpa POPTR_0009s01480 I 0.847
Eucgr.A01143 Eucalyptus grandis Eucgr.A01143 I 0.845
PRUPE_ppa025069mg Prunus persica PRUPE_ppa025069mg N 0.841
TCP20 Arabidopsis thaliana AT3G27010 D 0.841
gene21453-v1.0-hybrid Fragaria vesca gene21453-v1.0-hybrid I 0.840
Gorai.006G043800 Gossypium raimondii Gorai.006G043800 I 0.836
GSMUA_Achr5G25030_001 Musa acuminata GSMUA_Achr5G25030_001 I 0.835
TCP19 Arabidopsis thaliana AT5G51910 D 0.835
Pavir.J20370 Panicum virgatum Pavir.J20370 I 0.834
Pavir.J02457 Panicum virgatum Pavir.J02457 N 0.834
POPTR_0003s16630 Populus trichocarpa POPTR_0003s16630 I 0.834
GLYMA08G41070 Glycine max GLYMA08G41070 I 0.834
LjSGA_053525.1 Lotus japonicus LjSGA_053525.1 D 0.833
AT-TCP20 Arabidopsis lyrata fgenesh2_kg.5__478__AT3G27010.1 D 0.832
GSMUA_Achr11G01790_001 Musa acuminata GSMUA_Achr11G01790_001 I 0.831
Cla018905 Citrullus lanatus Cla018905 I 0.831
TCM_007700 Theobroma cacao TCM_007700 I 0.831
Gorai.005G211900 Gossypium raimondii Gorai.005G211900 I 0.831
Cucsa.166230 Cucumis sativus Cucsa.166230 I 0.831
Gorai.013G068600 Gossypium raimondii Gorai.013G068600 I 0.831
AMTR_s00029p00040760 Amborella trichopoda AMTR_s00029p00040760 I 0.831
PK13567.1 Cannabis sativa PK13567.1 I 0.831
SapurV1A.0103s0310 Salix purpurea SapurV1A.0103s0310 I 0.831
Solyc11g020670.1 Solanum lycopersicum Solyc11g020670.1 I 0.831
Cucsa.014000 Cucumis sativus Cucsa.014000 I 0.831
PGSC0003DMG400016363 Solanum tuberosum PGSC0003DMG400016363 I 0.831
Cla020356 Citrullus lanatus Cla020356 I 0.830
cassava35647.valid.m1 Manihot esculenta cassava35647.valid.m1 I 0.830
Lus10037046.g Linum usitatissimum Lus10037046.g I 0.830
OGLUM04G03150 Oryza glumaepatula OGLUM04G03150 I 0.829
GRMZM2G096610 Zea mays GRMZM2G096610 I 0.829
OS04G0194600 Oryza sativa OS04G0194600 I 0.829
ORGLA04G0027800 Oryza glaberrima ORGLA04G0027800 I 0.829
ORUFI04G04370 Oryza rufipogon ORUFI04G04370 I 0.829
Pavir.Ga02405 Panicum virgatum Pavir.Ga02405 I 0.829
Aquca_021_00091 Aquilegia coerulea Aquca_021_00091 I 0.829
ONIVA04G02900 Oryza nivara ONIVA04G02900 I 0.829
OBART04G03730 Oryza barthii OBART04G03730 I 0.829
BGIOSGA009049 Oryza indica BGIOSGA009049 I 0.828
GSMUA_Achr8G00050_001 Musa acuminata GSMUA_Achr8G00050_001 I 0.828
SapurV1A.2902s0010 Salix purpurea SapurV1A.2902s0010 I 0.826
Bra016090 Brassica rapa Bra016090 I 0.826
Lus10010177.g Linum usitatissimum Lus10010177.g I 0.826
POPTR_0005s09250 Populus trichocarpa POPTR_0005s09250 I 0.826
POPTR_0007s07480 Populus trichocarpa POPTR_0007s07480 I 0.826
OMERI02G35970 Oryza meridionalis OMERI02G35970 I 0.826
GSMUA_Achr6G02720_001 Musa acuminata GSMUA_Achr6G02720_001 I 0.826
gene12294-v1.0-hybrid Fragaria vesca gene12294-v1.0-hybrid I 0.826
mgf024922m Mimulus guttatus mgf024922m I 0.826
OPUNC02G35370 Oryza punctata OPUNC02G35370 I 0.826
BRADI4G35520 Brachypodium distachyon BRADI4G35520 I 0.825
TCM_036394 Theobroma cacao TCM_036394 I 0.825
VIT_18s0117g00340 Vitis vinifera VIT_18s0117g00340 I 0.825
LjSGA_018700.2 Lotus japonicus LjSGA_018700.2 I 0.824
OPUNC08G20520 Oryza punctata OPUNC08G20520 I 0.823
ORGLA02G0333700 Oryza glaberrima ORGLA02G0333700 I 0.822
ORUFI02G39810 Oryza rufipogon ORUFI02G39810 I 0.822
Cla009248 Citrullus lanatus Cla009248 I 0.822
ONIVA02G40990 Oryza nivara ONIVA02G40990 I 0.822
SapurV1A.0333s0240 Salix purpurea SapurV1A.0333s0240 I 0.822
OGLUM01G49640 Oryza glumaepatula OGLUM01G49640 I 0.822
OS02G0828566 Oryza sativa OS02G0828566 I 0.822