CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_022798
(
Theobroma cacao
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
TCM_022798
T344447_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.841
0.582
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.841
0.582
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.841
0.582
TCP20
M11397_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.841
0.582
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.835
0.545
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC
GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.833
0.564
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC
GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.832
0.582
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY08401
TCP
37
91
RDKGDRHTKVEGRDRRIRIPLTCCSGVFRLTREMGHRTHGQTIQWLLQQSRPDLL
EOY08402
TCP
37
91
RDKGDRHTKVEGRDRRIRIPLTCCSGVFRLTREMGHRTHGQTIQWLLQQSRPDLL
EOY08403
TCP
37
91
RDKGDRHTKVEGRDRRIRIPLTCCSGVFRLTREMGHRTHGQTIQWLLQQSRPDLL
Links
Other
TCP
family TFs
Other
Theobroma cacao
TFs
82 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy