CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BRC2
(
Vitis vinifera
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
VIT_01s0011g02920
T344487_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.897
0.418
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.849
0.405
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC
GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.846
0.399
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VIT_01s0011g02920.t01
TCP
63
220
TGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDILGFDKASKTIEWLFTKSKAAIKELTGNLPQIKHIGGGGTSGGTSASSISESKGTSRLKEIAHNGEPKGIVTNGESSVLTTPKEKKNRKPRSKSALNPLAKESREKARARARERTREKMIMR
Links
Other
TCP
family TFs
Other
Vitis vinifera
TFs
99 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy