Ca_24948 (Cicer arietinum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Ca_24948 T344522_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.953 0.437
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.933 0.430
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.932 0.391
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.905 0.391
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.905 0.391
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.904 0.371
TCP17
M07290_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP17_col_a
0.904 0.377
TCP17
M07291_2.00
Arabidopsis thaliana
RTGGGGACCAC

GTGGTCCCCAY
Dap-seq
OMalley et al.(2016)
TCP17_colamp_a
0.904 0.377
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.886 0.331
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC

GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.885 0.344
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.881 0.338
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN

NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.870 0.351
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC

GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.868 0.344
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN

NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.863 0.311
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH

DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.863 0.311
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN

NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.863 0.311
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_24948 TCP 50 352

Links

Other TCP family TFs
Other Cicer arietinum TFs

427 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28179.m000458 Ricinus communis 28179.m000458 N 0.000
AMTR_s00044p00144500 Amborella trichopoda AMTR_s00044p00144500 N 0.000
cassava20168.m1 Manihot esculenta cassava20168.m1 N 0.000
cassava44568.m1 Manihot esculenta cassava44568.m1 N 0.000
chr2.CM0177.470.nc Lotus japonicus chr2.CM0177.470.nc N 0.000
Ciclev10026033m.g Citrus clementina Ciclev10026033m.g N 0.000
Cla014299 Citrullus lanatus Cla014299 N 0.000
Cucsa.103750 Cucumis sativus Cucsa.103750 N 0.000
evm.TU.supercontig_129.20 Carica papaya evm.TU.supercontig_129.20 N 0.000
gene05559-v1.0-hybrid Fragaria vesca gene05559-v1.0-hybrid N 0.000
GLYMA01G02380 Glycine max GLYMA01G02380 N 0.000
GLYMA09G33600 Glycine max GLYMA09G33600 N 0.000
Gorai.003G035800 Gossypium raimondii Gorai.003G035800 N 0.000
GSMUA_Achr3G08870_001 Musa acuminata GSMUA_Achr3G08870_001 N 0.000
Lus10002159.g Linum usitatissimum Lus10002159.g N 0.000
Lus10039632.g Linum usitatissimum Lus10039632.g N 0.000
MDP0000312273 Malus domestica MDP0000312273 N 0.000
MTR_7g076850 Medicago truncatula MTR_7g076850 N 0.000
orange1.1g037355m.g Citrus sinensis orange1.1g037355m.g N 0.000
PK06741.1 Cannabis sativa PK06741.1 N 0.000
Pm002284 Prunus mume Pm002284 N 0.000
POPTR_0018s04230 Populus trichocarpa POPTR_0018s04230 N 0.000
PRUPE_ppa003947mg Prunus persica PRUPE_ppa003947mg N 0.000
TCM_000914 Theobroma cacao TCM_000914 N 0.000
VIT_17s0000g03540 Vitis vinifera VIT_17s0000g03540 N 0.000