Cla019340 (Citrullus lanatus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cla019340 T344544_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.941 0.418
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.940 0.392
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.924 0.335
TCP17
M07290_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP17_col_a
0.906 0.354
TCP17
M07291_2.00
Arabidopsis thaliana
RTGGGGACCAC

GTGGTCCCCAY
Dap-seq
OMalley et al.(2016)
TCP17_colamp_a
0.906 0.354
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.885 0.323
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.885 0.323
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.858 0.291
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.857 0.259
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN

NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.830 0.259
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH

DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.830 0.259
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN

NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.830 0.259
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla019340 TCP 50 305

Links

Other TCP family TFs
Other Citrullus lanatus TFs

323 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NFKB2 Homo sapiens ENSG00000077150 D 0.000
NFKB1 Homo sapiens ENSG00000109320 D 0.000
Nfkb1 Mus musculus ENSMUSG00000028163 D 0.000
ENSPANG00000023882 Papio anubis ENSPANG00000023882 I 0.000
NFKB1 Tupaia belangeri ENSTBEG00000003520 I 0.000
ENSSTOG00000011445 Ictidomys tridecemlineatus ENSSTOG00000011445 I 0.000
NFKB1 Sus scrofa ENSSSCG00000030957 I 0.000
ENSSHAG00000007374 Sarcophilus harrisii ENSSHAG00000007374 I 0.000
Nfkb1 Rattus norvegicus ENSRNOG00000023258 I 0.000
NFKB1 Pteropus vampyrus ENSPVAG00000002722 I 0.000
NFKB1 Otolemur garnettii ENSOGAG00000012840 I 0.000
ENSPSIG00000008515 Pelodiscus sinensis ENSPSIG00000008515 I 0.000
ENSPPYG00000014965 Pongo abelii ENSPPYG00000014965 I 0.000
NFKB1 Procavia capensis ENSPCAG00000008172 I 0.000
NFKB1 Ochotona princeps ENSOPRG00000005212 I 0.000
NFKB1 Pan troglodytes ENSPTRG00000016320 I 0.000
NFKB1 Taeniopygia guttata ENSTGUG00000003595 I 0.000
NFKB1 Tursiops truncatus ENSTTRG00000010852 I 0.000
nfkb1.L Xenopus laevis XB-GENE-985749 I 0.000
nfkb1 Xenopus tropicalis XB-GENE-985746 I 0.000
Pvit_05196 Pogona vitticeps Pvit_05196 I 0.000
Ogr10707 Ophisaurus gracilis Ogr10707 I 0.000
Myotis_brandtii_NFKB1_10013135 Myotis brandtii Myotis_brandtii_NFKB1_10013135 I 0.000
Gfo_R000994 Geospiza fortis Gfo_R000994 I 0.000
ENSP00000226574 Macaca fascicularis ENSP00000226574 I 0.000
ENSBTAP00000027016-D1 Bos grunniens ENSBTAP00000027016-D1 I 0.000
Brh_R011794 Buceros rhinoceros Brh_R011794 I 0.000
Alligator_sinensis_CCG005309.1 Alligator sinensis Alligator_sinensis_CCG005309.1 I 0.000
Afo_R015662 Aptenodytes forsteri Afo_R015662 I 0.000
Aan_R012729 Calypte anna Aan_R012729 I 0.000
NFKB1 Vicugna pacos ENSVPAG00000000280 I 0.000
NFKB1 Oryctolagus cuniculus ENSOCUG00000021712 I 0.000
ENSOARG00000012718 Ovis aries ENSOARG00000012718 I 0.000
NFKB1 Felis catus ENSFCAG00000007557 I 0.000
ENSFALG00000008136 Ficedula albicollis ENSFALG00000008136 I 0.000
NFKB1 Equus caballus ENSECAG00000015042 I 0.000
Nfkb1 Dipodomys ordii ENSDORG00000007447 I 0.000
NFKB1 Dasypus novemcinctus ENSDNOG00000006855 I 0.000
nfkb1 Danio rerio ENSDARG00000105261 I 0.000
ENSCSAG00000004049 Chlorocebus sabaeus ENSCSAG00000004049 I 0.000
NFKB1 Cavia porcellus ENSCPOG00000007789 I 0.000
NFKB1 Callithrix jacchus ENSCJAG00000015382 I 0.000
NFKB1 Canis familiaris ENSCAFG00000010730 I 0.000
NFKB1 Bos taurus ENSBTAG00000020270 I 0.000
ENSAPLG00000013878 Anas platyrhynchos ENSAPLG00000013878 I 0.000
ENSAMEG00000008882 Ailuropoda melanoleuca ENSAMEG00000008882 I 0.000
NFKB1 Gallus gallus ENSGALG00000012304 I 0.000
NFKB1 Gorilla gorilla ENSGGOG00000009071 I 0.000
ENSOANG00000028755 Ornithorhynchus anatinus ENSOANG00000028755 I 0.000
ENSOANG00000022123 Ornithorhynchus anatinus ENSOANG00000022123 I 0.000
ENSNLEG00000013325 Nomascus leucogenys ENSNLEG00000013325 I 0.000
ENSMPUG00000009413 Mustela putorius furo ENSMPUG00000009413 I 0.000
NFKB1 Monodelphis domestica ENSMODG00000020672 I 0.000
NFKB1 Macaca mulatta ENSMMUG00000003736 I 0.000
NFKB1 Myotis lucifugus ENSMLUG00000005986 I 0.000
NFKB1 Meleagris gallopavo ENSMGAG00000011299 I 0.000
ENSMEUG00000001334 Macropus eugenii ENSMEUG00000001334 I 0.000
ENSLOCG00000012080 Lepisosteus oculatus ENSLOCG00000012080 I 0.000
NFKB1 Loxodonta africana ENSLAFG00000009344 I 0.000
ENSLACG00000002751 Latimeria chalumnae ENSLACG00000002751 I 0.000
ENSAMXG00000003341 Astyanax mexicanus ENSAMXG00000003341 I 0.000