29728.m000800 (Ricinus communis)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 29728.m000800 T344576_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP23
M00891_2.00
Arabidopsis thaliana
NNGGKCCCAC

GTGGGMCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP23
0.971 0.538
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC

GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.968 0.566
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN

NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.967 0.524
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN

NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.967 0.524
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC

GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.963 0.517
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN

NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.962 0.510
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC

GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.959 0.503
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH

DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.959 0.503
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW

WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.959 0.503
TCP15
M11394_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.959 0.503
TCP21
M07292_2.00
Arabidopsis thaliana
NNRTGGGDCCCACN

NGTGGGHCCCAYNN
Dap-seq
OMalley et al.(2016)
At5g08330_col_a
0.959 0.434
TCP21
M07293_2.00
Arabidopsis thaliana
RTRGGDCCCACH

DGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a
0.959 0.434
TCP7
M07294_2.00
Arabidopsis thaliana
RTGGGNCCCAC

GTGGGNCCCAY
Dap-seq
OMalley et al.(2016)
TCP7_col_a
0.958 0.441
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9232
0.952 0.421
PCF2
M11399_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.952 0.414
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC

GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.949 0.400
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC

GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.948 0.448
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC

GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.945 0.434
TCP9
M01086_2.00
Arabidopsis thaliana
NNGGGCCCACN

NGTGGGCCCNN
PBM
Sullivan et al.(2014)
pTH9796
0.945 0.434
TCP9
M07281_2.00
Arabidopsis thaliana
RTGGGDCCCAC

GTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a
0.945 0.434
TCP9
M07282_2.00
Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN

NVNHNHNHHGTGGGYCCCACH
Dap-seq
OMalley et al.(2016)
At2g45680_col_b
0.945 0.434
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.945 0.407
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH

DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.945 0.434
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN

NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.944 0.400
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC

GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.944 0.400
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH

DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.944 0.400
TCP20
M11397_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.944 0.400
VIT_15s0048g01150
M02515_2.00
Vitis vinifera
NNGGNCCCAC

GTGGGNCCNN
PBM
Weirauch et al.(2014)
pTH9294
0.944 0.414
PK14653.1
M01317_2.00
Cannabis sativa
BGGSCCCAC

GTGGGSCCV
PBM
Lambert et al.(2019)
pTH11324
0.941 0.400
PK14653.1
M02517_2.00
Cannabis sativa
BTGGGCCCAV

BTGGGCCCAV
PBM
Weirauch et al.(2014)
pTH9586
0.941 0.400
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC

GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.938 0.407
OsI_08196
M02513_2.00
Oryza sativa
GGGCCCAC

GTGGGCCC
PBM
Weirauch et al.(2014)
pTH9274
0.938 0.386
OS02G0635800
M02512_2.00
Oryza sativa
NBGGGCCCVN

NBGGGCCCVN
PBM
Weirauch et al.(2014)
pTH8856
0.938 0.379
TCP11
M11395_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_01
0.891 0.379
TCP11
M11396_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_02
0.891 0.379
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29728.m000800 TCP 109 299

Links

Other TCP family TFs
Other Ricinus communis TFs

656 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g05276 Acanthocheilonema viteae nAv.1.0.1.g05276 I 0.000
AAEL000869 Aedes aegypti AAEL000869 I 0.000
ACAC_0000515301 Angiostrongylus cantonensis ACAC_0000515301 I 0.000
AATE011452 Anopheles atroparvus AATE011452 I 0.000
ACOM022805 Anopheles coluzzii ACOM022805 I 0.000
ADIR005637 Anopheles dirus ADIR005637 I 0.000
AFAF000823 Anopheles farauti AFAF000823 I 0.000
AGAP010926 Anopheles gambiae AGAP010926 I 0.000
AMEC011115 Anopheles melas AMEC011115 I 0.000
AMEM009379 Anopheles merus AMEM009379 I 0.000
ASTEI06414 Anopheles stephensi ASTEI06414 I 0.000
GB48486 Apis mellifera GB48486 I 0.000
BGIBMGA003190 Bombyx mori BGIBMGA003190 I 0.000
Bm9493 Brugia malayi Bm9493 I 0.000
BXY_1436800 Bursaphelenchus xylophilus BXY_1436800 I 0.000
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.000
Cflo_04170--XP_001120914.1_APIME Camponotus floridanus Cflo_04170--XP_001120914.1_APIME I 0.000
CGI_10001094 Crassostrea gigas CGI_10001094 I 0.000
KGM_22443 Danaus plexippus KGM_22443 I 0.000
DILT_0000061901 Diphyllobothrium latum DILT_0000061901 I 0.000
GF10411 Drosophila ananassae FBgn0087452 I 0.000
GG13774 Drosophila erecta FBgn0106037 I 0.000
GH16734 Drosophila grimshawi FBgn0124205 I 0.000
sens Drosophila melanogaster FBgn0002573 D 0.000
GI13460 Drosophila mojavensis FBgn0136216 I 0.000
GL15695 Drosophila persimilis FBgn0153299 I 0.000
GA28112 Drosophila pseudoobscura FBgn0249475 I 0.000
GA16696 Drosophila pseudoobscura FBgn0076711 I 0.000
GM24598 Drosophila sechellia FBgn0179461 I 0.000
GD12667 Drosophila simulans FBgn0184394 I 0.000
GJ11823 Drosophila virilis FBgn0199077 I 0.000
GK12454 Drosophila willistoni FBgn0214464 I 0.000
GE20069 Drosophila yakuba FBgn0237393 I 0.000
HCOI00212900 Haemonchus contortus HCOI00212900 I 0.000
HMEL012459 Heliconius melpomene HMEL012459 I 0.000
HelroG67579 Helobdella robusta HelroG67579 I 0.000
HelroG145685 Helobdella robusta HelroG145685 I 0.000
HelroG145534 Helobdella robusta HelroG145534 I 0.000
GFI1B Homo sapiens ENSG00000165702 D 0.000
LotgiG98465 Lottia gigantea LotgiG98465 I 0.000
LCUP007432 Lucilia cuprina LCUP007432 I 0.000
LLOJ009104 Lutzomyia longipalpis LLOJ009104 I 0.000
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.000
MESCA000812 Megaselia scalaris MESCA000812 I 0.000
MhA1_Contig1061.frz3.gene12 Meloidogyne hapla MhA1_Contig1061.frz3.gene12 I 0.000
MDOA006012 Musca domestica MDOA006012 I 0.000
NV16026 Nasonia vitripennis NV16026 I 0.000
GFI1B Ochotona princeps ENSOPRG00000000125 I 0.000
ENSPTRG00000000961 Pan troglodytes ENSPTRG00000000961 I 0.000
PTRK_0000195600 Parastrongyloides trichosuri PTRK_0000195600 I 0.000
PHUM248190 Pediculus humanus PHUM248190 I 0.000
GFI1 Procavia capensis ENSPCAG00000011020 I 0.000
PXEA_0001261301 Protopolystoma xenopodis PXEA_0001261301 I 0.000
RSKR_0000656700 Rhabditophanes kr3021 RSKR_0000656700 I 0.000
SSLN_0000272801 Schistocephalus solidus SSLN_0000272801 I 0.000
SPAL_0000614400 Strongyloides papillosus SPAL_0000614400 I 0.000
SSTP_0000165900 Strongyloides stercoralis SSTP_0000165900 I 0.000
SVE_0901200 Strongyloides venezuelensis SVE_0901200 I 0.000
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.000
TC013474 Tribolium castaneum TC013474 I 0.000
WUBG_13248 Wuchereria bancrofti WUBG_13248 I 0.000
L798_01833 Zootermopsis nevadensis L798_01833 I 0.000