cassava35625.valid.m1 (Manihot esculenta)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 cassava35625.valid.m1 T344615_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC

GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.979 0.841
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC

GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.973 0.673
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.970 0.628
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN

NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.969 0.611
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC

GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.969 0.611
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH

DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.969 0.611
TCP20
M11397_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.969 0.611
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH

DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.966 0.637
VIT_15s0048g01150
M02515_2.00
Vitis vinifera
NNGGNCCCAC

GTGGGNCCNN
PBM
Weirauch et al.(2014)
pTH9294
0.963 0.575
PCF2
M11399_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.963 0.558
TCP9
M01086_2.00
Arabidopsis thaliana
NNGGGCCCACN

NGTGGGCCCNN
PBM
Sullivan et al.(2014)
pTH9796
0.960 0.566
TCP9
M07281_2.00
Arabidopsis thaliana
RTGGGDCCCAC

GTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a
0.960 0.566
TCP9
M07282_2.00
Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN

NVNHNHNHHGTGGGYCCCACH
Dap-seq
OMalley et al.(2016)
At2g45680_col_b
0.960 0.566
PK14653.1
M01317_2.00
Cannabis sativa
BGGSCCCAC

GTGGGSCCV
PBM
Lambert et al.(2019)
pTH11324
0.960 0.575
PK14653.1
M02517_2.00
Cannabis sativa
BTGGGCCCAV

BTGGGCCCAV
PBM
Weirauch et al.(2014)
pTH9586
0.960 0.575
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC

GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.958 0.549
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC

GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.957 0.566
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH

DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.957 0.566
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW

WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.957 0.566
TCP15
M11394_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.957 0.566
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC

GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.956 0.584
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN

NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.955 0.566
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC

GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.951 0.584
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC

GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.951 0.513
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9232
0.948 0.513
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN

NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.946 0.540
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN

NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.946 0.540
TCP23
M00891_2.00
Arabidopsis thaliana
NNGGKCCCAC

GTGGGMCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP23
0.942 0.549
TCP7
M07294_2.00
Arabidopsis thaliana
RTGGGNCCCAC

GTGGGNCCCAY
Dap-seq
OMalley et al.(2016)
TCP7_col_a
0.939 0.558
TCP21
M07292_2.00
Arabidopsis thaliana
NNRTGGGDCCCACN

NGTGGGHCCCAYNN
Dap-seq
OMalley et al.(2016)
At5g08330_col_a
0.935 0.575
TCP21
M07293_2.00
Arabidopsis thaliana
RTRGGDCCCACH

DGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a
0.935 0.575
OS02G0635800
M02512_2.00
Oryza sativa
NBGGGCCCVN

NBGGGCCCVN
PBM
Weirauch et al.(2014)
pTH8856
0.927 0.487
OsI_08196
M02513_2.00
Oryza sativa
GGGCCCAC

GTGGGCCC
PBM
Weirauch et al.(2014)
pTH9274
0.927 0.478
TCP11
M11395_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_01
0.891 0.496
TCP11
M11396_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_02
0.891 0.496
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava35625.valid.m1 TCP 73 305

Links

Other TCP family TFs
Other Manihot esculenta TFs

654 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00007p00267580 Amborella trichopoda AMTR_s00007p00267580 I 0.000
Ca_19289 Cicer arietinum Ca_19289 I 0.000
Pm008963 Prunus mume Pm008963 I 0.000
Pm027119 Prunus mume Pm027119 I 0.000
29739.m003713 Ricinus communis 29739.m003713 I 0.000
Cucsa.117420 Cucumis sativus Cucsa.117420 I 0.000
mgf012918m Mimulus guttatus mgf012918m I 0.000
Bostr.7128s0527 Boechera stricta Bostr.7128s0527 I 0.000
Cagra.1961s0078 Capsella grandiflora Cagra.1961s0078 I 0.000
Carubv10000065m.g Capsella rubella Carubv10000065m.g I 0.000
Carubv10008159m.g Capsella rubella Carubv10008159m.g I 0.000
Gorai.001G017000 Gossypium raimondii Gorai.001G017000 I 0.000
Gorai.010G091300 Gossypium raimondii Gorai.010G091300 I 0.000
Lus10033635.g Linum usitatissimum Lus10033635.g I 0.000
MDP0000185253 Malus domestica MDP0000185253 I 0.000
SapurV1A.4298s0010 Salix purpurea SapurV1A.4298s0010 I 0.000
Thhalv10006635m.g Eutrema salsugineum Thhalv10006635m.g I 0.000
LjSGA_022975.2 Lotus japonicus LjSGA_022975.2 I 0.000
VIT_11s0016g00640 Vitis vinifera VIT_11s0016g00640 I 0.000
Sb07g027080 Sorghum bicolor Sb07g027080 I 0.000
PRUPE_ppa024354mg Prunus persica PRUPE_ppa024354mg I 0.000
ARF19 Arabidopsis thaliana AT1G19220 I 0.000
Bo5g027250 Brassica oleracea Bo5g027250 I 0.000
Bo8g068380 Brassica oleracea Bo8g068380 I 0.000
Bra025720 Brassica rapa Bra025720 I 0.000
BRADI1G46602 Brachypodium distachyon BRADI1G46602 I 0.000
GLYMA09G08350 Glycine max GLYMA09G08350 I 0.000
GLYMA15G19980 Glycine max GLYMA15G19980 I 0.000
GRMZM2G317900 Zea mays GRMZM2G317900 I 0.000
MTR_2g043250 Medicago truncatula MTR_2g043250 I 0.000
PRUPE_ppa000708mg Prunus persica PRUPE_ppa000708mg I 0.000
PRUPE_ppa000479mg Prunus persica PRUPE_ppa000479mg I 0.000
POPTR_0006s14070 Populus trichocarpa POPTR_0006s14070 I 0.000
ORUFI06G26570 Oryza rufipogon ORUFI06G26570 I 0.000
OMERI04G24630 Oryza meridionalis OMERI04G24630 I 0.000
OB06G15720 Oryza brachyantha OB06G15720 I 0.000
MTR_4g124900 Medicago truncatula MTR_4g124900 I 0.000
LjSGA_026543.1 Lotus japonicus LjSGA_026543.1 I 0.000
ARF19 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001739 N 0.000