Cucsa.283930 (Cucumis sativus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cucsa.283930 T344649_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS

SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.923 0.508
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC

GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.864 0.500
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH

DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.856 0.452
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.283930.1 TCP 85 210

Links

Other TCP family TFs
Other Cucumis sativus TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCP1 Arabidopsis thaliana AT1G67260 D 0.856
PK19717.1 Cannabis sativa PK19717.1 D 0.864
PK12240.1 Cannabis sativa PK12240.1 D 0.923
Cla016709 Citrullus lanatus Cla016709 I 0.862
mgf019480m Mimulus guttatus mgf019480m I 0.856
mgf022233m Mimulus guttatus mgf022233m I 0.848
mgf024687m Mimulus guttatus mgf024687m I 0.863
mgf026636m Mimulus guttatus mgf026636m I 0.830
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.885
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.854
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.941
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.873
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.865
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.941
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.941
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.908
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.870
Pm015499 Prunus mume Pm015499 I 0.834
Pm029002 Prunus mume Pm029002 I 0.870
Pm030202 Prunus mume Pm030202 I 0.843
29738.m001041 Ricinus communis 29738.m001041 I 0.872
30167.m000856 Ricinus communis 30167.m000856 I 0.899
30174.m008721 Ricinus communis 30174.m008721 I 0.828
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.912
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.868
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.829
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.828
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.869
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.855
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.902
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.866
MDP0000272980 Malus domestica MDP0000272980 I 0.912
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.902
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.866
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.828
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.877
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.839
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.893
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.827
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.827
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.883
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.857
MDP0000173048 Malus domestica MDP0000173048 I 0.892
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.910
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.900
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.835
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.826
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.883
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.868
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.922
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.863
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.841
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.882
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.851
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.924
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.889
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.848
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.862
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.865
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.855
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.839
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.832
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.859
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.865
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.891
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.843
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.899
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.822
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.856
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.879
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.846
BRC2 Arabidopsis thaliana AT1G68800 I 0.941
Bo2g061250 Brassica oleracea Bo2g061250 I 0.895
Bo6g103670 Brassica oleracea Bo6g103670 I 0.858
Bra004097 Brassica rapa Bra004097 I 0.865
Bra004212 Brassica rapa Bra004212 I 0.854
Bra038350 Brassica rapa Bra038350 I 0.895
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.898
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.941
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.839
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.878
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.869
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.862
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.823
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.859
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.899
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.858
TCM_011874 Theobroma cacao TCM_011874 I 0.883
TCM_012252 Theobroma cacao TCM_012252 I 0.884
TCM_019518 Theobroma cacao TCM_019518 I 0.865
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.857
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.857
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.857
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.857
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.856
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.880
Cla002355 Citrullus lanatus Cla002355 I 0.885
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.860
Si033183m.g Setaria italica Si033183m.g I 0.823
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.900
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.870
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.888
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.836
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.827
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.883
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.843
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.870
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.834
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.837
SELMODRAFT_7330 Selaginella moellendorffii SELMODRAFT_7330 I 0.835
Cla007227 Citrullus lanatus Cla007227 I 0.838
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.836
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.828