Bostr.1460s0130 (Boechera stricta)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Bostr.1460s0130 T344706_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.950 0.602
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.950 0.602
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.931 0.534
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.918 0.475
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.918 0.492
TCP17
M07290_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP17_col_a
0.902 0.458
TCP17
M07291_2.00
Arabidopsis thaliana
RTGGGGACCAC

GTGGTCCCCAY
Dap-seq
OMalley et al.(2016)
TCP17_colamp_a
0.902 0.458
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.896 0.449
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.888 0.441
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN

NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.884 0.449
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH

DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.884 0.449
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN

NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.884 0.449
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.879 0.424
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC

GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.875 0.415
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN

NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.855 0.398
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC

GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.855 0.398
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.1460s0130.1.p TCP 72 237

Links

Other TCP family TFs
Other Boechera stricta TFs

425 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BRADI5G26110 Brachypodium distachyon BRADI5G26110 N 0.000
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.000
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.000
GSMUA_Achr9G21870_001 Musa acuminata GSMUA_Achr9G21870_001 N 0.000
OBART04G29570 Oryza barthii OBART04G29570 N 0.000
OB04G36550 Oryza brachyantha OB04G36550 N 0.000
ORGLA04G0258700 Oryza glaberrima ORGLA04G0258700 N 0.000
OGLUM04G29490 Oryza glumaepatula OGLUM04G29490 N 0.000
BGIOSGA014092 Oryza indica BGIOSGA014092 N 0.000
OMERI04G25000 Oryza meridionalis OMERI04G25000 N 0.000
ONIVA04G28100 Oryza nivara ONIVA04G28100 N 0.000
OPUNC04G27130 Oryza punctata OPUNC04G27130 N 0.000
ORUFI04G31270 Oryza rufipogon ORUFI04G31270 N 0.000
OS04G0676700 Oryza sativa OS04G0676700 N 0.000
Pavir.Ga00233 Panicum virgatum Pavir.Ga00233 N 0.000
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N 0.000
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.000
Si022762m.g Setaria italica Si022762m.g N 0.000
Sb06g032880 Sorghum bicolor Sb06g032880 N 0.000
GRMZM2G149958 Zea mays GRMZM2G149958 I 0.000