Cagra.1157s0001 (Capsella grandiflora)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cagra.1157s0001 T344728_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS

SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.951 0.516
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC

GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.872 0.453
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH

DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.866 0.430
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1157s0001.1.p TCP 112 239

Links

Other TCP family TFs
Other Capsella grandiflora TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.983
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.982
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.977
BRC2 Arabidopsis thaliana AT1G68800 I 0.976
PK12240.1 Cannabis sativa PK12240.1 D 0.951
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.942
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.941
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.941
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.938
MDP0000272980 Malus domestica MDP0000272980 I 0.932
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.928
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.927
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.927
30167.m000856 Ricinus communis 30167.m000856 I 0.923
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.923
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.922
Bo2g061250 Brassica oleracea Bo2g061250 I 0.921
Bra038350 Brassica rapa Bra038350 I 0.921
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.920
MDP0000173048 Malus domestica MDP0000173048 I 0.919
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.919
Cla002355 Citrullus lanatus Cla002355 I 0.915
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.915
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.915
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.915
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.915
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.911
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.909
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.909
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.908
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.907
TCM_011874 Theobroma cacao TCM_011874 I 0.907
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.906
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.906
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.905
Pm029002 Prunus mume Pm029002 I 0.904
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.904
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.903
29738.m001041 Ricinus communis 29738.m001041 I 0.903
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.902
Bra004097 Brassica rapa Bra004097 I 0.901
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.901
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.900
mgf024687m Mimulus guttatus mgf024687m I 0.900
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.898
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.898
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.898
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.897
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.896
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.896
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.892
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.892
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.891
Bo6g103670 Brassica oleracea Bo6g103670 I 0.891
TCM_019518 Theobroma cacao TCM_019518 I 0.890
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.889
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.889
mgf019480m Mimulus guttatus mgf019480m I 0.889
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.888
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.888
Bra004212 Brassica rapa Bra004212 I 0.888
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.885
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.884
Cla016709 Citrullus lanatus Cla016709 I 0.878
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.878
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.875
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.873
mgf026636m Mimulus guttatus mgf026636m I 0.873
PK19717.1 Cannabis sativa PK19717.1 D 0.872
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.872
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.872
Pm015499 Prunus mume Pm015499 I 0.869
Cla007227 Citrullus lanatus Cla007227 I 0.868
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.868
TCM_012252 Theobroma cacao TCM_012252 I 0.867
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.867
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.866
TCP1 Arabidopsis thaliana AT1G67260 D 0.866
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.864
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.864
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.863
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.863
mgf022233m Mimulus guttatus mgf022233m I 0.862
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.862
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.859
Bo6g099040 Brassica oleracea Bo6g099040 I 0.859
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.858
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.856
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.856
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.855
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.855
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.854
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.854
LjSGA_018294.2 Lotus japonicus LjSGA_018294.2 I 0.854
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.854
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.853
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.853
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.852
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.851
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.851
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.851
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.851
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.849
Pm030202 Prunus mume Pm030202 I 0.848
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.848
30174.m008721 Ricinus communis 30174.m008721 I 0.847
SELMODRAFT_7330 Selaginella moellendorffii SELMODRAFT_7330 I 0.845
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.841
Bra034010 Brassica rapa Bra034010 I 0.838
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.837
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.837
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.837
Bo2g055640 Brassica oleracea Bo2g055640 I 0.836
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.834
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.833
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.833
Si033183m.g Setaria italica Si033183m.g I 0.833
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.833
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.831
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.831
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.831
SELMODRAFT_28794 Selaginella moellendorffii SELMODRAFT_28794 I 0.830
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.829
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.829
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.827
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.826
MDP0000224810 Malus domestica MDP0000224810 N 0.826
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.825
Cla019282 Citrullus lanatus Cla019282 N 0.824
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.824