Cagra.1365s0013 (Capsella grandiflora)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cagra.1365s0013 T344730_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP17
M07290_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP17_col_a
0.964 0.691
TCP17
M07291_2.00
Arabidopsis thaliana
RTGGGGACCAC

GTGGTCCCCAY
Dap-seq
OMalley et al.(2016)
TCP17_colamp_a
0.964 0.691
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.932 0.500
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.932 0.500
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.926 0.582
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.926 0.564
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.900 0.491
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.860 0.427
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.826 0.409
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1365s0013.1.p TCP 47 212

Links

Other TCP family TFs
Other Capsella grandiflora TFs

299 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28345.m000111 Ricinus communis 28345.m000111 N 0.000
29603.m000536 Ricinus communis 29603.m000536 I 0.000
Al_scaffold_0409_3 Arabidopsis lyrata Al_scaffold_0409_3 I 0.000
ZFP11 Arabidopsis thaliana AT2G42410 I 0.000
SUP Arabidopsis thaliana AT3G23130 I 0.000
AT4G17810 Arabidopsis thaliana AT4G17810 I 0.000
RBE Arabidopsis thaliana AT5G06070 D 0.000
BGIOSGA015610 Oryza indica BGIOSGA015610 I 0.000
BGIOSGA018378 Oryza indica BGIOSGA018378 I 0.000
BGIOSGA033510 Oryza indica BGIOSGA033510 I 0.000
Bo1g017920 Brassica oleracea Bo1g017920 I 0.000
Bo1g102390 Brassica oleracea Bo1g102390 I 0.000
Bo3g003640 Brassica oleracea Bo3g003640 I 0.000
Bo9g176590 Brassica oleracea Bo9g176590 I 0.000
Bostr.13129s0367 Boechera stricta Bostr.13129s0367 I 0.000
Bostr.19424s0332 Boechera stricta Bostr.19424s0332 I 0.000
Bostr.25993s0539 Boechera stricta Bostr.25993s0539 I 0.000
Bostr.30275s0246 Boechera stricta Bostr.30275s0246 I 0.000
Bra005874 Brassica rapa Bra005874 I 0.000
Bra009160 Brassica rapa Bra009160 I 0.000
Bra013257 Brassica rapa Bra013257 I 0.000
Bra023759 Brassica rapa Bra023759 I 0.000
BRADI1G52490 Brachypodium distachyon BRADI1G52490 I 0.000
BRADI3G55760 Brachypodium distachyon BRADI3G55760 I 0.000
Cagra.2117s0055 Capsella grandiflora Cagra.2117s0055 I 0.000
Cagra.2636s0028 Capsella grandiflora Cagra.2636s0028 I 0.000
Cagra.3356s0074 Capsella grandiflora Cagra.3356s0074 I 0.000
Cagra.3462s0001 Capsella grandiflora Cagra.3462s0001 I 0.000
Carubv10002935m.g Capsella rubella Carubv10002935m.g I 0.000
Carubv10006881m.g Capsella rubella Carubv10006881m.g I 0.000
Carubv10016073m.g Capsella rubella Carubv10016073m.g I 0.000
Carubv10024766m.g Capsella rubella Carubv10024766m.g I 0.000
cassava14614.m1 Manihot esculenta cassava14614.m1 I 0.000
cassava22028.m1 Manihot esculenta cassava22028.m1 I 0.000
cassava3359.m1 Manihot esculenta cassava3359.m1 I 0.000
cassava40050.m1 Manihot esculenta cassava40050.m1 I 0.000
cassava4410.m1 Manihot esculenta cassava4410.m1 N 0.000
Ca_12901 Cicer arietinum Ca_12901 I 0.000
Ciclev10006961m.g Citrus clementina Ciclev10006961m.g I 0.000
Cla008944 Citrullus lanatus Cla008944 I 0.000
Cla016442 Citrullus lanatus Cla016442 I 0.000
Cla021878 Citrullus lanatus Cla021878 I 0.000
Cucsa.255130 Cucumis sativus Cucsa.255130 I 0.000
Cucsa.313240 Cucumis sativus Cucsa.313240 I 0.000
Cucsa.321760 Cucumis sativus Cucsa.321760 I 0.000
evm.TU.supercontig_44.99 Carica papaya evm.TU.supercontig_44.99 I 0.000
e_gw1.1.457.1 Physcomitrella patens e_gw1.1.457.1 I 0.000
e_gw1.14.264.1 Physcomitrella patens e_gw1.14.264.1 I 0.000
e_gw1.186.49.1 Physcomitrella patens e_gw1.186.49.1 I 0.000
e_gw1.6.268.1 Physcomitrella patens e_gw1.6.268.1 I 0.000
F775_00917 Aegilops tauschii F775_00917 I 0.000
F775_21953 Aegilops tauschii F775_21953 I 0.000
SUP Arabidopsis lyrata fgenesh2_kg.3__2524__AT3G23130.1 I 0.000
RBE Arabidopsis lyrata fgenesh2_kg.6__542__AT5G06070.1 I 0.000
gene08240-v1.0-hybrid Fragaria vesca gene08240-v1.0-hybrid I 0.000
GLYMA07G16290 Glycine max GLYMA07G16290 I 0.000
GLYMA11G34285 Glycine max GLYMA11G34285 I 0.000
GLYMA12G35930 Glycine max GLYMA12G35930 I 0.000
GLYMA13G34450 Glycine max GLYMA13G34450 I 0.000
Gorai.002G256500 Gossypium raimondii Gorai.002G256500 N 0.000
Gorai.005G047800 Gossypium raimondii Gorai.005G047800 I 0.000
Gorai.006G247700 Gossypium raimondii Gorai.006G247700 I 0.000
Gorai.008G226800 Gossypium raimondii Gorai.008G226800 I 0.000
Gorai.012G106300 Gossypium raimondii Gorai.012G106300 I 0.000
GRMZM2G000126 Zea mays GRMZM2G000126 I 0.000
GRMZM2G137736 Zea mays GRMZM2G137736 I 0.000
GRMZM2G344974 Zea mays GRMZM2G344974 I 0.000
GRMZM2G409452 Zea mays GRMZM2G409452 I 0.000
GRMZM2G443109 Zea mays GRMZM2G443109 I 0.000
GSMUA_Achr7G26850_001 Musa acuminata GSMUA_Achr7G26850_001 I 0.000
LjSGA_038753.2 Lotus japonicus LjSGA_038753.2 I 0.000
LPERR04G01660 Leersia perrieri LPERR04G01660 I 0.000
LPERR05G08090 Leersia perrieri LPERR05G08090 I 0.000
Lus10000705.g Linum usitatissimum Lus10000705.g I 0.000
Lus10021213.g Linum usitatissimum Lus10021213.g I 0.000
Lus10022204.g Linum usitatissimum Lus10022204.g I 0.000
Lus10022206.g Linum usitatissimum Lus10022206.g I 0.000
Lus10024875.g Linum usitatissimum Lus10024875.g I 0.000
MDP0000225209 Malus domestica MDP0000225209 I 0.000
mg013419m Mimulus guttatus mg013419m I 0.000
mgf024356m Mimulus guttatus mgf024356m I 0.000
MLOC_76482 Hordeum vulgare MLOC_76482 I 0.000
MTR_1g070265 Medicago truncatula MTR_1g070265 I 0.000
OB02G10110 Oryza brachyantha OB02G10110 I 0.000
OB02G44430 Oryza brachyantha OB02G44430 I 0.000
OB04G12040 Oryza brachyantha OB04G12040 I 0.000
OB05G18710 Oryza brachyantha OB05G18710 I 0.000
OBART04G02370 Oryza barthii OBART04G02370 I 0.000
OBART05G10090 Oryza barthii OBART05G10090 I 0.000
OBART11G23770 Oryza barthii OBART11G23770 I 0.000
OGLUM04G02100 Oryza glumaepatula OGLUM04G02100 I 0.000
OGLUM05G10360 Oryza glumaepatula OGLUM05G10360 I 0.000
OGLUM11G22950 Oryza glumaepatula OGLUM11G22950 I 0.000
OLONG_005038 Oryza longistaminata OLONG_005038 I 0.000
OLONG_022667 Oryza longistaminata OLONG_022667 I 0.000
OLONG_023754 Oryza longistaminata OLONG_023754 I 0.000
OMERI04G02610 Oryza meridionalis OMERI04G02610 I 0.000
OMERI07G13080 Oryza meridionalis OMERI07G13080 I 0.000
ONIVA04G01910 Oryza nivara ONIVA04G01910 I 0.000
ONIVA06G26970 Oryza nivara ONIVA06G26970 I 0.000
ONIVA11G23290 Oryza nivara ONIVA11G23290 I 0.000
OPUNC05G08760 Oryza punctata OPUNC05G08760 I 0.000
OPUNC11G05640 Oryza punctata OPUNC11G05640 I 0.000
orange1.1g041626m.g Citrus sinensis orange1.1g041626m.g I 0.000
ORGLA05G0088100 Oryza glaberrima ORGLA05G0088100 I 0.000
ORUFI04G03150 Oryza rufipogon ORUFI04G03150 I 0.000
ORUFI05G10920 Oryza rufipogon ORUFI05G10920 I 0.000
ORUFI11G25670 Oryza rufipogon ORUFI11G25670 I 0.000
OS04G0168100 Oryza sativa OS04G0168100 I 0.000
OS05G0286100 Oryza sativa OS05G0286100 I 0.000
OS11G0707300 Oryza sativa OS11G0707300 I 0.000
Pavir.Aa03593 Panicum virgatum Pavir.Aa03593 I 0.000
Pavir.Ab00024 Panicum virgatum Pavir.Ab00024 I 0.000
Pavir.Ab03315 Panicum virgatum Pavir.Ab03315 I 0.000
Pavir.Ba02387 Panicum virgatum Pavir.Ba02387 I 0.000
Pavir.Bb00955 Panicum virgatum Pavir.Bb00955 I 0.000
Pavir.Gb02516 Panicum virgatum Pavir.Gb02516 I 0.000
Pavir.J31403 Panicum virgatum Pavir.J31403 I 0.000
PDK_20s1313421g001 Phoenix dactylifera PDK_20s1313421g001 I 0.000
PDK_20s1360411g001 Phoenix dactylifera PDK_20s1360411g001 I 0.000
PGSC0003DMG400017271 Solanum tuberosum PGSC0003DMG400017271 I 0.000
PGSC0003DMG400040225 Solanum tuberosum PGSC0003DMG400040225 I 0.000
Pm002649 Prunus mume Pm002649 N 0.000
Pm009420 Prunus mume Pm009420 I 0.000
POPTR_0002s04260 Populus trichocarpa POPTR_0002s04260 I 0.000
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I 0.000
POPTR_0010s08530 Populus trichocarpa POPTR_0010s08530 I 0.000
POPTR_0016s10480 Populus trichocarpa POPTR_0016s10480 I 0.000
PRUPE_ppa015007mg Prunus persica PRUPE_ppa015007mg I 0.000
SapurV1A.0006s1030 Salix purpurea SapurV1A.0006s1030 I 0.000
SapurV1A.0007s0790 Salix purpurea SapurV1A.0007s0790 I 0.000
SapurV1A.0007s0800 Salix purpurea SapurV1A.0007s0800 I 0.000
SapurV1A.0292s0190 Salix purpurea SapurV1A.0292s0190 I 0.000
SapurV1A.0292s0200 Salix purpurea SapurV1A.0292s0200 I 0.000
SapurV1A.0378s0150 Salix purpurea SapurV1A.0378s0150 I 0.000
Sb02g009930 Sorghum bicolor Sb02g009930 I 0.000
Sb04g037590 Sorghum bicolor Sb04g037590 I 0.000
Sb06g001730 Sorghum bicolor Sb06g001730 I 0.000
scaffold_403098.1 Arabidopsis lyrata scaffold_403098.1 I 0.000
Si011797m.g Setaria italica Si011797m.g I 0.000
Si019050m.g Setaria italica Si019050m.g I 0.000
Si019563m.g Setaria italica Si019563m.g I 0.000
Si024070m.g Setaria italica Si024070m.g I 0.000
Si032478m.g Setaria italica Si032478m.g I 0.000
Solyc06g053720.1 Solanum lycopersicum Solyc06g053720.1 I 0.000
Solyc09g089590.1 Solanum lycopersicum Solyc09g089590.1 I 0.000
TCM_021875 Theobroma cacao TCM_021875 I 0.000
TCM_021876 Theobroma cacao TCM_021876 N 0.000
Thhalv10015420m.g Eutrema salsugineum Thhalv10015420m.g I 0.000
Thhalv10017870m.g Eutrema salsugineum Thhalv10017870m.g I 0.000
Traes_1AL_80D0BD0DC Triticum aestivum Traes_1AL_80D0BD0DC I 0.000
Traes_1BL_4026DC5011 Triticum aestivum Traes_1BL_4026DC5011 I 0.000
Traes_2AS_099955797 Triticum aestivum Traes_2AS_099955797 I 0.000
Traes_2BS_0544D9D4B Triticum aestivum Traes_2BS_0544D9D4B I 0.000
Traes_2DS_035AA95E3 Triticum aestivum Traes_2DS_035AA95E3 I 0.000
TRIUR3_03721 Triticum urartu TRIUR3_03721 I 0.000
TRIUR3_04794 Triticum urartu TRIUR3_04794 I 0.000
TRIUR3_25222 Triticum urartu TRIUR3_25222 I 0.000
VIT_05s0049g00070 Vitis vinifera VIT_05s0049g00070 I 0.000
VIT_05s0049g00080 Vitis vinifera VIT_05s0049g00080 I 0.000