Cagra.2527s0006 (Capsella grandiflora)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cagra.2527s0006 T344737_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN

NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.936 0.575
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH

DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.936 0.575
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN

NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.936 0.575
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.928 0.547
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC

GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.925 0.538
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.914 0.566
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.887 0.443
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN

NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.885 0.462
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC

GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.885 0.462
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.862 0.443
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.862 0.443
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.839 0.406
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2527s0006.1.p TCP 27 187

Links

Other TCP family TFs
Other Capsella grandiflora TFs

406 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R006616 Calypte anna Aan_R006616 I 0.000
Afo_R014628 Aptenodytes forsteri Afo_R014628 I 0.000
B5DE03 Xenopus tropicalis B5DE03 I 0.000
B7ZSG3 Xenopus laevis B7ZSG3 I 0.000
ENSACAG00000002480 Anolis carolinensis ENSACAG00000002480 I 0.000
ENSAMEG00000006957 Ailuropoda melanoleuca ENSAMEG00000006957 I 0.000
ENSAMXG00000013017 Astyanax mexicanus ENSAMXG00000013017 I 0.000
ENSAPLG00000005775 Anas platyrhynchos ENSAPLG00000005775 I 0.000
ENSCSAG00000005257 Chlorocebus sabaeus ENSCSAG00000005257 I 0.000
ENSECAG00000022308 Equus caballus ENSECAG00000022308 I 0.000
ENSEEUG00000007221 Erinaceus europaeus ENSEEUG00000007221 I 0.000
ENSFALG00000010820 Ficedula albicollis ENSFALG00000010820 I 0.000
ENSGMOG00000012296 Gadus morhua ENSGMOG00000012296 I 0.000
ENSLACG00000016378 Latimeria chalumnae ENSLACG00000016378 I 0.000
ENSLOCG00000004537 Lepisosteus oculatus ENSLOCG00000004537 I 0.000
ENSMGAG00000001489 Meleagris gallopavo ENSMGAG00000001489 I 0.000
ENSMPUG00000011307 Mustela putorius furo ENSMPUG00000011307 I 0.000
ENSNLEG00000017890 Nomascus leucogenys ENSNLEG00000017890 I 0.000
ENSOANG00000015147 Ornithorhynchus anatinus ENSOANG00000015147 I 0.000
ENSOARG00000016334 Ovis aries ENSOARG00000016334 I 0.000
ENSONIG00000005545 Oreochromis niloticus ENSONIG00000005545 I 0.000
ENSONIG00000011043 Oreochromis niloticus ENSONIG00000011043 I 0.000
ENSOPRG00000015709 Ochotona princeps ENSOPRG00000015709 I 0.000
ENSP00000331327 Macaca fascicularis ENSP00000331327 I 0.000
ENSP00000331327-D1 Bos grunniens ENSP00000331327-D1 I 0.000
ENSPANG00000019482 Papio anubis ENSPANG00000019482 I 0.000
ENSPFOG00000010572 Poecilia formosa ENSPFOG00000010572 I 0.000
ENSPMAG00000008950 Petromyzon marinus ENSPMAG00000008950 I 0.000
ENSPPYG00000029822 Pongo abelii ENSPPYG00000029822 I 0.000
ENSPSIG00000013679 Pelodiscus sinensis ENSPSIG00000013679 I 0.000
ENSSARG00000000207 Sorex araneus ENSSARG00000000207 I 0.000
ENSSHAG00000017390 Sarcophilus harrisii ENSSHAG00000017390 I 0.000
ENSSTOG00000023716 Ictidomys tridecemlineatus ENSSTOG00000023716 I 0.000
ENSVPAG00000007788 Vicugna pacos ENSVPAG00000007788 I 0.000
ENSXMAG00000005139 Xiphophorus maculatus ENSXMAG00000005139 I 0.000
fgenesh2_pg.scaffold_80000039 Branchiostoma floridae fgenesh2_pg.scaffold_80000039 I 0.000
fgenesh2_pm.scaffold_110000013 Branchiostoma floridae fgenesh2_pm.scaffold_110000013 I 0.000
Gfo_R001970 Geospiza fortis Gfo_R001970 I 0.000
Pvit_09510 Pogona vitticeps Pvit_09510 I 0.000
wt1 Xenopus tropicalis XB-GENE-484999 I 0.000
WT1 Pan troglodytes ENSPTRG00000003476 I 0.000
WT1 Homo sapiens ENSG00000184937 D 0.000
WT1 Taeniopygia guttata ENSTGUG00000004906 I 0.000
Wt1 Rattus norvegicus ENSRNOG00000013074 I 0.000
WT1 Sus scrofa ENSSSCG00000013316 I 0.000
WT1 Microcebus murinus ENSMICG00000004097 I 0.000
WT1 Procavia capensis ENSPCAG00000002213 I 0.000
WT1 Gallus gallus ENSGALG00000012115 I 0.000
WT1 Felis catus ENSFCAG00000000308 I 0.000
WT1 Echinops telfairi ENSETEG00000000684 I 0.000
Wt1 Dipodomys ordii ENSDORG00000013725 I 0.000
WT1 Dasypus novemcinctus ENSDNOG00000003652 I 0.000
WT1 Callithrix jacchus ENSCJAG00000005900 I 0.000
WT1 Choloepus hoffmanni ENSCHOG00000006244 I 0.000
WT1 Canis familiaris ENSCAFG00000007426 I 0.000
WT1 Bos taurus ENSBTAG00000047268 I 0.000
WT1 Gorilla gorilla ENSGGOG00000011586 I 0.000
Wt1 Mus musculus ENSMUSG00000016458 D 0.000
WT1 Otolemur garnettii ENSOGAG00000007118 I 0.000
WT1 Monodelphis domestica ENSMODG00000009646 I 0.000
WT1 Macaca mulatta ENSMMUG00000009881 I 0.000
WT1 Myotis lucifugus ENSMLUG00000027523 I 0.000
wt1 Oryzias latipes ENSORLG00000009859 I 0.000
wt1 Oryzias latipes ENSORLG00000012424 I 0.000
WT1 Loxodonta africana ENSLAFG00000006160 I 0.000
WT1 Oryctolagus cuniculus ENSOCUG00000005882 I 0.000
wt1.L Xenopus laevis XB-GENE-6252376 I 0.000
wt1.S Xenopus laevis XB-GENE-864792 I 0.000
wt1a Danio rerio ENSDARG00000031420 I 0.000
wt1b Danio rerio ENSDARG00000007990 I 0.000
wt1b Gasterosteus aculeatus ENSGACG00000016020 I 0.000
wt1b Tetraodon nigroviridis ENSTNIG00000013806 I 0.000
wt1b Takifugu rubripes ENSTRUG00000006559 I 0.000