Carubv10013748m.g (Capsella rubella)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Carubv10013748m.g T344755_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM

KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.838 0.410
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10013748m TCP 149 312
Carubv10013749m TCP 149 312

Links

Other TCP family TFs
Other Capsella rubella TFs

91 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.1681s0023 Capsella grandiflora Cagra.1681s0023 I 0.983
BRC1 Arabidopsis thaliana AT3G18550 I 0.975
BRC1 Arabidopsis lyrata scaffold_302193.1 N 0.971
Thhalv10021948m.g Eutrema salsugineum Thhalv10021948m.g N 0.970
Bra001710 Brassica rapa Bra001710 I 0.970
Bo5g117410 Brassica oleracea Bo5g117410 N 0.969
Bostr.19424s0807 Boechera stricta Bostr.19424s0807 I 0.969
Bo3g071560 Brassica oleracea Bo3g071560 I 0.965
Bo1g117490 Brassica oleracea Bo1g117490 I 0.958
Bra037579 Brassica rapa Bra037579 I 0.958
TCM_012252 Theobroma cacao TCM_012252 I 0.885
Cla019282 Citrullus lanatus Cla019282 N 0.875
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.873
30174.m008721 Ricinus communis 30174.m008721 I 0.870
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.866
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.866
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.865
MDP0000224810 Malus domestica MDP0000224810 N 0.865
F775_01923 Aegilops tauschii F775_01923 I 0.862
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.861
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.861
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.860
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.860
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.858
LPERR03G25950 Leersia perrieri LPERR03G25950 I 0.854
Si015230m.g Setaria italica Si015230m.g I 0.854
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.853
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.853
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.853
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.853
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.852
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.852
Cucsa.198860 Cucumis sativus Cucsa.198860 N 0.851
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.851
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.851
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.850
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I 0.848
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.847
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.847
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I 0.845
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.845
Pavir.Ia00838 Panicum virgatum Pavir.Ia00838 I 0.845
OS09G0410500 Oryza sativa OS09G0410500 I 0.841
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.841
OBART09G10040 Oryza barthii OBART09G10040 I 0.841
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.841
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.841
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.841
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.841
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.841
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.841
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.840
Cla018797 Citrullus lanatus Cla018797 N 0.840
Si038692m.g Setaria italica Si038692m.g I 0.839
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.839
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.838
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.838
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.838
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.838
TB1 Oryza sativa OS03G0706500 D 0.838
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.837
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.837
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.836
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.835
MDP0000219838 Malus domestica MDP0000219838 N 0.835
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I 0.834
OMERI03G27910 Oryza meridionalis OMERI03G27910 I 0.834
OBART03G31290 Oryza barthii OBART03G31290 I 0.834
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.833
OS08G0432300 Oryza sativa OS08G0432300 I 0.832
OGLUM08G16380 Oryza glumaepatula OGLUM08G16380 I 0.832
ORUFI08G17540 Oryza rufipogon ORUFI08G17540 I 0.832
BGIOSGA028717 Oryza indica BGIOSGA028717 I 0.832
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.831
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.831
OMERI08G12900 Oryza meridionalis OMERI08G12900 I 0.831
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.831
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.831
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.831
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.830
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.829
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.827
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.827
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.826
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.825
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.824
Si033183m.g Setaria italica Si033183m.g I 0.824
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.822
Pm030202 Prunus mume Pm030202 I 0.822
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.822