CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Eucgr.K02535
(
Eucalyptus grandis
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
Eucgr.K02535
T344806_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC
GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.899
0.446
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY
RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.894
0.446
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC
GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.861
0.385
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY
RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.832
0.377
TCP17
M07290_2.00
Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP17_col_a
0.830
0.385
TCP17
M07291_2.00
Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY
Dap-seq
OMalley et al.(2016)
TCP17_colamp_a
0.830
0.385
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Eucgr.K02535.1
TCP
53
228
FGGKDRHSKVRTVRGLRDRRIRLSAPAAVQLYYLQDILGLTQPSKVIDWLIEAARHDIEKLPPLQIPQGFSEVINQQLLFPPESINFFDASLPFTKHGLISPSLTLLAGSAKMEVNEDCVWSADDRTRLKSKYYWDGISKLSERSNEFERGCFSDKSKQIDLNVRENQEDISSSGT
Links
Other
TCP
family TFs
Other
Eucalyptus grandis
TFs
154 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy